Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trim40Q3UWA4 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
Trim40Q3UWA4 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.58□□□□□ -0.39
Trim40Q3UWA4 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.58□□□□□ -0.39
Trim40Q3UWA4 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trim40Q3UWA4 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trim40Q3UWA4 Gm44401-201ENSMUST00000204462 2375 ntBASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Gm27741-201ENSMUST00000185060 237 ntBASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Gm38225-201ENSMUST00000194001 393 ntBASIC12.58□□□□□ -0.4
Trim40Q3UWA4 AA619741-201ENSMUST00000195095 646 ntBASIC12.58□□□□□ -0.4
Trim40Q3UWA4 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC12.58□□□□□ -0.4
Trim40Q3UWA4 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Gm20553-201ENSMUST00000204205 844 ntBASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Bloc1s5-203ENSMUST00000224902 612 ntBASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trim40Q3UWA4 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Gm13823-201ENSMUST00000119930 345 ntBASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Gm18057-201ENSMUST00000208220 503 ntBASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Trim40Q3UWA4 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim40Q3UWA4 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim40Q3UWA4 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Trim40Q3UWA4 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim40Q3UWA4 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim40Q3UWA4 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim40Q3UWA4 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim40Q3UWA4 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim40Q3UWA4 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trim40Q3UWA4 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trim40Q3UWA4 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms