Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Gm9115-201ENSMUST00000120192 1348 ntBASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Gm13730-201ENSMUST00000121036 1462 ntBASIC14.38□□□□□ -0.11
Upf3bQ3ULL6 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Gm43570-201ENSMUST00000199951 3688 ntBASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Gm10327-201ENSMUST00000105222 1002 ntBASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Upf3bQ3ULL6 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Gm6745-201ENSMUST00000199216 526 ntBASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Gm9908-201ENSMUST00000211534 448 ntBASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 AC073947.2-201ENSMUST00000215888 1130 ntBASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 AC154595.3-201ENSMUST00000224579 384 ntBASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Upf3bQ3ULL6 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Gm15678-201ENSMUST00000117573 960 ntBASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms