Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lig3P97386 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lig3P97386 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lig3P97386 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Lig3P97386 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lig3P97386 Gm14452-201ENSMUST00000118680 1632 ntBASIC14.7□□□□□ -0.06
Lig3P97386 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lig3P97386 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Lig3P97386 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Gm18244-201ENSMUST00000219747 1566 ntBASIC14.69□□□□□ -0.06
Lig3P97386 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC14.69□□□□□ -0.06
Lig3P97386 Gm5912-201ENSMUST00000122282 1438 ntBASIC14.69□□□□□ -0.06
Lig3P97386 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC14.69□□□□□ -0.06
Lig3P97386 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC14.69□□□□□ -0.06
Lig3P97386 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC14.69□□□□□ -0.06
Lig3P97386 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Gm27731-201ENSMUST00000185192 107 ntBASIC14.69□□□□□ -0.06
Lig3P97386 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Gm9182-201ENSMUST00000217829 639 ntBASIC14.69□□□□□ -0.06
Lig3P97386 CT009713.10-202ENSMUST00000225734 696 ntBASIC14.69□□□□□ -0.06
Lig3P97386 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Gm43677-201ENSMUST00000198098 2378 ntBASIC14.69□□□□□ -0.06
Lig3P97386 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Lig3P97386 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Lig3P97386 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Lig3P97386 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Lig3P97386 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Lig3P97386 Gm43061-201ENSMUST00000198850 2241 ntBASIC14.68□□□□□ -0.06
Lig3P97386 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Lig3P97386 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC14.68□□□□□ -0.06
Lig3P97386 Gm12329-201ENSMUST00000120829 1007 ntBASIC14.68□□□□□ -0.06
Lig3P97386 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Gm4959-201ENSMUST00000197271 1044 ntBASIC14.68□□□□□ -0.06
Lig3P97386 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC14.68□□□□□ -0.06
Lig3P97386 Gm18222-201ENSMUST00000202416 1387 ntBASIC14.68□□□□□ -0.06
Lig3P97386 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Lig3P97386 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC14.67□□□□□ -0.06
Lig3P97386 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 BC001981-202ENSMUST00000191393 1545 ntBASIC14.67□□□□□ -0.06
Lig3P97386 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC14.67□□□□□ -0.06
Lig3P97386 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Lig3P97386 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Lig3P97386 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC14.67□□□□□ -0.06
Lig3P97386 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Lig3P97386 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC14.67□□□□□ -0.06
Lig3P97386 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Lig3P97386 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC14.67□□□□□ -0.06
Lig3P97386 Gm7172-201ENSMUST00000218047 1152 ntBASIC14.67□□□□□ -0.06
Lig3P97386 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lig3P97386 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC14.67□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms