Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdh11P55288 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdh11P55288 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
Cdh11P55288 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC12.27□□□□□ -0.45
Cdh11P55288 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC12.27□□□□□ -0.45
Cdh11P55288 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC12.27□□□□□ -0.45
Cdh11P55288 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Cdh11P55288 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC12.27□□□□□ -0.45
Cdh11P55288 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC12.27□□□□□ -0.45
Cdh11P55288 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Cdh11P55288 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdh11P55288 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
Cdh11P55288 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Cdh11P55288 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.26□□□□□ -0.45
Cdh11P55288 AC155298.2-201ENSMUST00000225485 6226 ntBASIC12.26□□□□□ -0.45
Cdh11P55288 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC12.26□□□□□ -0.45
Cdh11P55288 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Gm4875-201ENSMUST00000118257 786 ntBASIC12.26□□□□□ -0.45
Cdh11P55288 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
Cdh11P55288 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC12.26□□□□□ -0.45
Cdh11P55288 AA619741-201ENSMUST00000195095 646 ntBASIC12.26□□□□□ -0.45
Cdh11P55288 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Gtpbp10-211ENSMUST00000198799 648 ntBASIC12.26□□□□□ -0.45
Cdh11P55288 Gm44608-201ENSMUST00000206827 855 ntBASIC12.26□□□□□ -0.45
Cdh11P55288 CT030704.2-201ENSMUST00000228887 494 ntBASIC12.26□□□□□ -0.45
Cdh11P55288 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Cdh11P55288 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Cdh11P55288 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdh11P55288 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC12.25□□□□□ -0.45
Cdh11P55288 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Cdh11P55288 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Cdh11P55288 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Kcnk16-202ENSMUST00000225596 2127 ntBASIC12.25□□□□□ -0.45
Cdh11P55288 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Cdh11P55288 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.25□□□□□ -0.45
Cdh11P55288 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.25□□□□□ -0.45
Cdh11P55288 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Cdh11P55288 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC12.25□□□□□ -0.45
Cdh11P55288 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Cd63-ps-201ENSMUST00000145417 875 ntBASIC12.25□□□□□ -0.45
Cdh11P55288 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC12.25□□□□□ -0.45
Cdh11P55288 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdh11P55288 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Cdh11P55288 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.25□□□□□ -0.45
Cdh11P55288 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 96.9 ms