Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Gm14371-201ENSMUST00000138925 1518 ntBASIC20.31■□□□□ 0.84
Cux1P53564 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Cux1P53564 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Cux1P53564 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Gm12291-201ENSMUST00000121627 311 ntBASIC20.3■□□□□ 0.84
Cux1P53564 Gm15547-201ENSMUST00000122152 333 ntBASIC20.3■□□□□ 0.84
Cux1P53564 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC20.3■□□□□ 0.84
Cux1P53564 Gm27046-201ENSMUST00000182160 463 ntBASIC20.3■□□□□ 0.84
Cux1P53564 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Cux1P53564 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC20.3■□□□□ 0.84
Cux1P53564 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC20.3■□□□□ 0.84
Cux1P53564 Gm14752-201ENSMUST00000120719 2075 ntBASIC20.3■□□□□ 0.84
Cux1P53564 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cux1P53564 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Gm4782-201ENSMUST00000168705 2046 ntBASIC20.29■□□□□ 0.84
Cux1P53564 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Cux1P53564 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Cux1P53564 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Mir6927-201ENSMUST00000184494 71 ntBASIC20.29■□□□□ 0.84
Cux1P53564 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC20.29■□□□□ 0.84
Cux1P53564 Gm43416-201ENSMUST00000201916 1015 ntBASIC20.29■□□□□ 0.84
Cux1P53564 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC20.29■□□□□ 0.84
Cux1P53564 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC20.29■□□□□ 0.84
Cux1P53564 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Cux1P53564 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Cux1P53564 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cux1P53564 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Cux1P53564 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Cux1P53564 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Gm24845-201ENSMUST00000158034 109 ntBASIC20.28■□□□□ 0.84
Cux1P53564 Gm23363-201ENSMUST00000175024 79 ntBASIC20.28■□□□□ 0.84
Cux1P53564 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC20.28■□□□□ 0.84
Cux1P53564 Gm44262-201ENSMUST00000204969 372 ntBASIC20.28■□□□□ 0.84
Cux1P53564 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC20.28■□□□□ 0.84
Cux1P53564 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Cux1P53564 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Cux1P53564 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Cux1P53564 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cux1P53564 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Cux1P53564 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC20.27■□□□□ 0.84
Cux1P53564 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
Cux1P53564 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC20.27■□□□□ 0.84
Cux1P53564 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Cux1P53564 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cux1P53564 Gm43056-201ENSMUST00000197865 2791 ntBASIC20.27■□□□□ 0.83
Cux1P53564 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Cux1P53564 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Cux1P53564 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Cux1P53564 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Cux1P53564 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Cux1P53564 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC20.27■□□□□ 0.83
Cux1P53564 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Cux1P53564 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC20.27■□□□□ 0.83
Cux1P53564 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms