Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC10.98□□□□□ -0.65
Sdc1P18828 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Sdc1P18828 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Sdc1P18828 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC10.98□□□□□ -0.65
Sdc1P18828 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Sdc1P18828 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC10.98□□□□□ -0.65
Sdc1P18828 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Sdc1P18828 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Sdc1P18828 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Sdc1P18828 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Sdc1P18828 AC166574.4-201ENSMUST00000227165 1937 ntBASIC10.97□□□□□ -0.65
Sdc1P18828 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Sdc1P18828 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC10.97□□□□□ -0.65
Sdc1P18828 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Sdc1P18828 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC10.97□□□□□ -0.65
Sdc1P18828 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC10.97□□□□□ -0.65
Sdc1P18828 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC10.97□□□□□ -0.65
Sdc1P18828 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC10.97□□□□□ -0.65
Sdc1P18828 AC149294.4-201ENSMUST00000227870 882 ntBASIC10.97□□□□□ -0.65
Sdc1P18828 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC10.97□□□□□ -0.65
Sdc1P18828 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Sdc1P18828 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Sdc1P18828 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Gm7104-201ENSMUST00000179741 2532 ntBASIC10.96□□□□□ -0.65
Sdc1P18828 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
Sdc1P18828 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC10.96□□□□□ -0.65
Sdc1P18828 Klk2-ps-201ENSMUST00000205342 571 ntBASIC10.96□□□□□ -0.65
Sdc1P18828 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 AC121577.1-201ENSMUST00000227302 707 ntBASIC10.96□□□□□ -0.65
Sdc1P18828 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC10.96□□□□□ -0.65
Sdc1P18828 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Sdc1P18828 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Sdc1P18828 CT025678.1-201ENSMUST00000214795 2972 ntBASIC10.96□□□□□ -0.66
Sdc1P18828 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
Sdc1P18828 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Sdc1P18828 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
Sdc1P18828 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
Sdc1P18828 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
Sdc1P18828 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Sdc1P18828 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
Sdc1P18828 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Sdc1P18828 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Sdc1P18828 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Gm25990-201ENSMUST00000102440 86 ntBASIC10.95□□□□□ -0.66
Sdc1P18828 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms