Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 AC117769.4-201ENSMUST00000225679 685 ntBASIC23.77■■□□□ 1.4
Smc1aQ9CU62 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Smc1aQ9CU62 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Smc1aQ9CU62 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Smc1aQ9CU62 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Smc1aQ9CU62 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Smc1aQ9CU62 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Smc1aQ9CU62 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
Smc1aQ9CU62 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Smc1aQ9CU62 Gm15820-201ENSMUST00000201566 728 ntBASIC23.76■■□□□ 1.39
Smc1aQ9CU62 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Smc1aQ9CU62 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Smc1aQ9CU62 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC23.75■■□□□ 1.39
Smc1aQ9CU62 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Smc1aQ9CU62 AC093043.1-201ENSMUST00000226700 898 ntBASIC23.75■■□□□ 1.39
Smc1aQ9CU62 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Smc1aQ9CU62 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Smc1aQ9CU62 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
Smc1aQ9CU62 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Smc1aQ9CU62 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smc1aQ9CU62 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smc1aQ9CU62 Gm13238-201ENSMUST00000117655 780 ntBASIC23.74■■□□□ 1.39
Smc1aQ9CU62 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smc1aQ9CU62 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC23.74■■□□□ 1.39
Smc1aQ9CU62 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
Smc1aQ9CU62 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smc1aQ9CU62 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smc1aQ9CU62 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC23.74■■□□□ 1.39
Smc1aQ9CU62 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smc1aQ9CU62 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
Smc1aQ9CU62 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Smc1aQ9CU62 Gm45444-201ENSMUST00000211394 898 ntBASIC23.73■■□□□ 1.39
Smc1aQ9CU62 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Smc1aQ9CU62 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Smc1aQ9CU62 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC23.72■■□□□ 1.39
Smc1aQ9CU62 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
Smc1aQ9CU62 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smc1aQ9CU62 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smc1aQ9CU62 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smc1aQ9CU62 Notumos-201ENSMUST00000151998 2659 ntBASIC23.71■■□□□ 1.39
Smc1aQ9CU62 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC23.71■■□□□ 1.39
Smc1aQ9CU62 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.39
Smc1aQ9CU62 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC23.7■■□□□ 1.39
Smc1aQ9CU62 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC23.7■■□□□ 1.39
Smc1aQ9CU62 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Smc1aQ9CU62 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC23.7■■□□□ 1.38
Smc1aQ9CU62 Rps24-207ENSMUST00000224568 714 ntBASIC23.7■■□□□ 1.38
Smc1aQ9CU62 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
Smc1aQ9CU62 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Smc1aQ9CU62 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC23.69■■□□□ 1.38
Smc1aQ9CU62 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC23.69■■□□□ 1.38
Smc1aQ9CU62 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Smc1aQ9CU62 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Smc1aQ9CU62 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Smc1aQ9CU62 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Smc1aQ9CU62 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Smc1aQ9CU62 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Smc1aQ9CU62 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC23.68■■□□□ 1.38
Smc1aQ9CU62 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
Smc1aQ9CU62 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Smc1aQ9CU62 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Smc1aQ9CU62 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Smc1aQ9CU62 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Smc1aQ9CU62 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Smc1aQ9CU62 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Smc1aQ9CU62 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
Smc1aQ9CU62 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Smc1aQ9CU62 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC23.66■■□□□ 1.38
Smc1aQ9CU62 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Smc1aQ9CU62 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Smc1aQ9CU62 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Smc1aQ9CU62 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Smc1aQ9CU62 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
Smc1aQ9CU62 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Smc1aQ9CU62 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Smc1aQ9CU62 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC23.65■■□□□ 1.38
Smc1aQ9CU62 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
Smc1aQ9CU62 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC23.65■■□□□ 1.38
Smc1aQ9CU62 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Smc1aQ9CU62 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Smc1aQ9CU62 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Smc1aQ9CU62 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Smc1aQ9CU62 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Smc1aQ9CU62 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Smc1aQ9CU62 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
Smc1aQ9CU62 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Smc1aQ9CU62 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC23.63■■□□□ 1.37
Smc1aQ9CU62 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC23.62■■□□□ 1.37
Smc1aQ9CU62 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC23.62■■□□□ 1.37
Smc1aQ9CU62 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Smc1aQ9CU62 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC23.62■■□□□ 1.37
Smc1aQ9CU62 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Smc1aQ9CU62 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Smc1aQ9CU62 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Smc1aQ9CU62 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
Smc1aQ9CU62 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Smc1aQ9CU62 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Smc1aQ9CU62 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
Smc1aQ9CU62 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Smc1aQ9CU62 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms