Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Chmp7Q8R1T1 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Chmp7Q8R1T1 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
Chmp7Q8R1T1 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC27.76■■■□□ 2.03
Chmp7Q8R1T1 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Chmp7Q8R1T1 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Chmp7Q8R1T1 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Chmp7Q8R1T1 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Chmp7Q8R1T1 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Chmp7Q8R1T1 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC27.74■■■□□ 2.03
Chmp7Q8R1T1 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC27.74■■■□□ 2.03
Chmp7Q8R1T1 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Chmp7Q8R1T1 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Chmp7Q8R1T1 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
Chmp7Q8R1T1 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Chmp7Q8R1T1 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
Chmp7Q8R1T1 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Chmp7Q8R1T1 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC27.72■■■□□ 2.03
Chmp7Q8R1T1 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC27.72■■■□□ 2.03
Chmp7Q8R1T1 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Chmp7Q8R1T1 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC27.72■■■□□ 2.03
Chmp7Q8R1T1 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
Chmp7Q8R1T1 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
Chmp7Q8R1T1 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC27.71■■■□□ 2.03
Chmp7Q8R1T1 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
Chmp7Q8R1T1 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Chmp7Q8R1T1 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Chmp7Q8R1T1 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Chmp7Q8R1T1 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Chmp7Q8R1T1 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Chmp7Q8R1T1 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Chmp7Q8R1T1 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
Chmp7Q8R1T1 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Chmp7Q8R1T1 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Chmp7Q8R1T1 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Chmp7Q8R1T1 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
Chmp7Q8R1T1 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
Chmp7Q8R1T1 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Chmp7Q8R1T1 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
Chmp7Q8R1T1 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Chmp7Q8R1T1 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Chmp7Q8R1T1 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
Chmp7Q8R1T1 Gm21956-201ENSMUST00000179946 522 ntBASIC27.67■■■□□ 2.02
Chmp7Q8R1T1 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC27.67■■■□□ 2.02
Chmp7Q8R1T1 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
Chmp7Q8R1T1 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
Chmp7Q8R1T1 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Chmp7Q8R1T1 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC27.66■■■□□ 2.02
Chmp7Q8R1T1 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Chmp7Q8R1T1 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
Chmp7Q8R1T1 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Chmp7Q8R1T1 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC27.64■■■□□ 2.02
Chmp7Q8R1T1 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
Chmp7Q8R1T1 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Chmp7Q8R1T1 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC27.64■■■□□ 2.02
Chmp7Q8R1T1 Gm12922-201ENSMUST00000120626 809 ntBASIC27.63■■■□□ 2.01
Chmp7Q8R1T1 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Chmp7Q8R1T1 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Chmp7Q8R1T1 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC27.62■■■□□ 2.01
Chmp7Q8R1T1 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Chmp7Q8R1T1 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC27.62■■■□□ 2.01
Chmp7Q8R1T1 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
Chmp7Q8R1T1 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Chmp7Q8R1T1 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Chmp7Q8R1T1 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Chmp7Q8R1T1 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC27.6■■■□□ 2.01
Chmp7Q8R1T1 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Chmp7Q8R1T1 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Chmp7Q8R1T1 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
Chmp7Q8R1T1 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC27.59■■■□□ 2.01
Chmp7Q8R1T1 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC27.59■■■□□ 2.01
Chmp7Q8R1T1 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Chmp7Q8R1T1 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Chmp7Q8R1T1 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Chmp7Q8R1T1 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC27.58■■■□□ 2.01
Chmp7Q8R1T1 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC27.58■■■□□ 2.01
Chmp7Q8R1T1 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
Chmp7Q8R1T1 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC27.58■■■□□ 2.01
Chmp7Q8R1T1 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
Chmp7Q8R1T1 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC27.57■■■□□ 2
Chmp7Q8R1T1 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC27.57■■■□□ 2
Chmp7Q8R1T1 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC27.57■■■□□ 2
Chmp7Q8R1T1 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC27.57■■■□□ 2
Chmp7Q8R1T1 Gm10620-201ENSMUST00000098379 1332 ntBASIC27.57■■■□□ 2
Chmp7Q8R1T1 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC27.57■■■□□ 2
Chmp7Q8R1T1 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC27.56■■■□□ 2
Chmp7Q8R1T1 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC27.56■■■□□ 2
Chmp7Q8R1T1 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC27.56■■■□□ 2
Chmp7Q8R1T1 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC27.56■■■□□ 2
Chmp7Q8R1T1 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC27.55■■■□□ 2
Chmp7Q8R1T1 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC27.55■■■□□ 2
Chmp7Q8R1T1 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC27.55■■■□□ 2
Chmp7Q8R1T1 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC27.55■■■□□ 2
Chmp7Q8R1T1 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC27.55■■■□□ 2
Chmp7Q8R1T1 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC27.55■■■□□ 2
Chmp7Q8R1T1 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Chmp7Q8R1T1 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC27.54■■■□□ 2
Chmp7Q8R1T1 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Chmp7Q8R1T1 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC27.54■■■□□ 2
Chmp7Q8R1T1 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC27.54■■■□□ 2
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms