Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim47Q8C0E3 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim47Q8C0E3 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC23.91■■□□□ 1.42
Trim47Q8C0E3 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim47Q8C0E3 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Trim47Q8C0E3 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim47Q8C0E3 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Trim47Q8C0E3 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim47Q8C0E3 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Trim47Q8C0E3 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
Trim47Q8C0E3 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim47Q8C0E3 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim47Q8C0E3 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Trim47Q8C0E3 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Trim47Q8C0E3 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC23.89■■□□□ 1.41
Trim47Q8C0E3 Gm16464-201ENSMUST00000117815 1095 ntBASIC23.88■■□□□ 1.41
Trim47Q8C0E3 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim47Q8C0E3 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Trim47Q8C0E3 AC093043.1-201ENSMUST00000226700 898 ntBASIC23.88■■□□□ 1.41
Trim47Q8C0E3 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim47Q8C0E3 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim47Q8C0E3 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim47Q8C0E3 Gm10232-201ENSMUST00000089221 720 ntBASIC23.87■■□□□ 1.41
Trim47Q8C0E3 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim47Q8C0E3 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim47Q8C0E3 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim47Q8C0E3 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC23.86■■□□□ 1.41
Trim47Q8C0E3 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim47Q8C0E3 Gm18755-201ENSMUST00000218030 1099 ntBASIC23.86■■□□□ 1.41
Trim47Q8C0E3 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC23.86■■□□□ 1.41
Trim47Q8C0E3 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim47Q8C0E3 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Trim47Q8C0E3 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC23.85■■□□□ 1.41
Trim47Q8C0E3 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC23.85■■□□□ 1.41
Trim47Q8C0E3 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Trim47Q8C0E3 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Trim47Q8C0E3 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Trim47Q8C0E3 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
Trim47Q8C0E3 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim47Q8C0E3 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim47Q8C0E3 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim47Q8C0E3 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim47Q8C0E3 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim47Q8C0E3 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim47Q8C0E3 Gm42501-201ENSMUST00000200220 1026 ntBASIC23.83■■□□□ 1.41
Trim47Q8C0E3 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Trim47Q8C0E3 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC23.83■■□□□ 1.4
Trim47Q8C0E3 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim47Q8C0E3 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Trim47Q8C0E3 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim47Q8C0E3 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim47Q8C0E3 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Trim47Q8C0E3 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC23.82■■□□□ 1.4
Trim47Q8C0E3 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim47Q8C0E3 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC23.82■■□□□ 1.4
Trim47Q8C0E3 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim47Q8C0E3 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim47Q8C0E3 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim47Q8C0E3 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC23.81■■□□□ 1.4
Trim47Q8C0E3 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim47Q8C0E3 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Trim47Q8C0E3 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim47Q8C0E3 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Trim47Q8C0E3 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim47Q8C0E3 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Trim47Q8C0E3 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim47Q8C0E3 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim47Q8C0E3 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC23.79■■□□□ 1.4
Trim47Q8C0E3 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim47Q8C0E3 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim47Q8C0E3 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
Trim47Q8C0E3 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim47Q8C0E3 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim47Q8C0E3 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim47Q8C0E3 Gm11847-201ENSMUST00000125165 1119 ntBASIC23.78■■□□□ 1.4
Trim47Q8C0E3 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC23.78■■□□□ 1.4
Trim47Q8C0E3 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim47Q8C0E3 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim47Q8C0E3 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC23.78■■□□□ 1.4
Trim47Q8C0E3 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim47Q8C0E3 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim47Q8C0E3 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Trim47Q8C0E3 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Gm8093-201ENSMUST00000128935 1892 ntBASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Trim47Q8C0E3 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim47Q8C0E3 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC23.76■■□□□ 1.39
Trim47Q8C0E3 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim47Q8C0E3 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms