Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ubfd1Q78JW9 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ubfd1Q78JW9 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Ubfd1Q78JW9 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ubfd1Q78JW9 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ubfd1Q78JW9 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ubfd1Q78JW9 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ubfd1Q78JW9 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ubfd1Q78JW9 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ubfd1Q78JW9 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.97■□□□□ 0.95
Ubfd1Q78JW9 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC20.96■□□□□ 0.95
Ubfd1Q78JW9 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Ubfd1Q78JW9 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ubfd1Q78JW9 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.96■□□□□ 0.95
Ubfd1Q78JW9 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ubfd1Q78JW9 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ubfd1Q78JW9 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Ubfd1Q78JW9 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ubfd1Q78JW9 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
Ubfd1Q78JW9 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ubfd1Q78JW9 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ubfd1Q78JW9 Gm8093-201ENSMUST00000128935 1892 ntBASIC20.94■□□□□ 0.94
Ubfd1Q78JW9 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ubfd1Q78JW9 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
Ubfd1Q78JW9 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ubfd1Q78JW9 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.94■□□□□ 0.94
Ubfd1Q78JW9 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ubfd1Q78JW9 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ubfd1Q78JW9 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ubfd1Q78JW9 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ubfd1Q78JW9 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ubfd1Q78JW9 Gm7417-201ENSMUST00000192950 473 ntBASIC20.93■□□□□ 0.94
Ubfd1Q78JW9 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ubfd1Q78JW9 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ubfd1Q78JW9 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ubfd1Q78JW9 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ubfd1Q78JW9 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ubfd1Q78JW9 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 Gm10399-202ENSMUST00000202768 748 ntBASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ubfd1Q78JW9 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.91■□□□□ 0.94
Ubfd1Q78JW9 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.91■□□□□ 0.94
Ubfd1Q78JW9 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.91■□□□□ 0.94
Ubfd1Q78JW9 Gm40881-201ENSMUST00000223397 166 ntBASIC20.91■□□□□ 0.94
Ubfd1Q78JW9 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ubfd1Q78JW9 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Ubfd1Q78JW9 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ubfd1Q78JW9 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ubfd1Q78JW9 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ubfd1Q78JW9 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ubfd1Q78JW9 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ubfd1Q78JW9 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ubfd1Q78JW9 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ubfd1Q78JW9 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ubfd1Q78JW9 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Ubfd1Q78JW9 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ubfd1Q78JW9 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ubfd1Q78JW9 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.89■□□□□ 0.93
Ubfd1Q78JW9 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ubfd1Q78JW9 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.89■□□□□ 0.93
Ubfd1Q78JW9 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ubfd1Q78JW9 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ubfd1Q78JW9 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ubfd1Q78JW9 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ubfd1Q78JW9 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ubfd1Q78JW9 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.88■□□□□ 0.93
Ubfd1Q78JW9 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ubfd1Q78JW9 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ubfd1Q78JW9 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ubfd1Q78JW9 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Ubfd1Q78JW9 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ubfd1Q78JW9 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Ubfd1Q78JW9 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ubfd1Q78JW9 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ubfd1Q78JW9 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ubfd1Q78JW9 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ubfd1Q78JW9 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Ubfd1Q78JW9 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Ubfd1Q78JW9 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ubfd1Q78JW9 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ubfd1Q78JW9 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ubfd1Q78JW9 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ubfd1Q78JW9 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ubfd1Q78JW9 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
Ubfd1Q78JW9 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Ubfd1Q78JW9 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ubfd1Q78JW9 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ubfd1Q78JW9 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ubfd1Q78JW9 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ubfd1Q78JW9 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ubfd1Q78JW9 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ubfd1Q78JW9 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 102.3 ms