Protein–RNA interactions for Protein: Q6NSQ5

Sp140, Sp140 nuclear body protein, mousemouse

Predictions only

Length 534 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sp140Q6NSQ5 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Sp140Q6NSQ5 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Sp140Q6NSQ5 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Sp140Q6NSQ5 Mir6538-201ENSMUST00000183713 110 ntBASIC21.8■■□□□ 1.08
Sp140Q6NSQ5 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Sp140Q6NSQ5 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Sp140Q6NSQ5 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Sp140Q6NSQ5 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Sp140Q6NSQ5 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Gm12366-201ENSMUST00000121722 873 ntBASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Gm5786-201ENSMUST00000085368 882 ntBASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Sp140Q6NSQ5 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Sp140Q6NSQ5 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC21.78■■□□□ 1.08
Sp140Q6NSQ5 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC21.78■■□□□ 1.08
Sp140Q6NSQ5 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Sp140Q6NSQ5 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Sp140Q6NSQ5 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
Sp140Q6NSQ5 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Sp140Q6NSQ5 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Sp140Q6NSQ5 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC21.77■■□□□ 1.08
Sp140Q6NSQ5 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Sp140Q6NSQ5 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Sp140Q6NSQ5 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Sp140Q6NSQ5 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Sp140Q6NSQ5 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Sp140Q6NSQ5 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Sp140Q6NSQ5 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Sp140Q6NSQ5 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Sp140Q6NSQ5 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Sp140Q6NSQ5 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Sp140Q6NSQ5 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Sp140Q6NSQ5 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Sp140Q6NSQ5 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Sp140Q6NSQ5 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.75■■□□□ 1.07
Sp140Q6NSQ5 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Sp140Q6NSQ5 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Sp140Q6NSQ5 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Sp140Q6NSQ5 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Sp140Q6NSQ5 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.74■■□□□ 1.07
Sp140Q6NSQ5 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Sp140Q6NSQ5 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Sp140Q6NSQ5 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Sp140Q6NSQ5 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Sp140Q6NSQ5 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Sp140Q6NSQ5 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.74■■□□□ 1.07
Sp140Q6NSQ5 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Sp140Q6NSQ5 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Sp140Q6NSQ5 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Sp140Q6NSQ5 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Sp140Q6NSQ5 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.73■■□□□ 1.07
Sp140Q6NSQ5 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Sp140Q6NSQ5 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Sp140Q6NSQ5 Gm37415-201ENSMUST00000192265 2054 ntBASIC21.72■■□□□ 1.07
Sp140Q6NSQ5 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.71■■□□□ 1.07
Sp140Q6NSQ5 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Sp140Q6NSQ5 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Sp140Q6NSQ5 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
Sp140Q6NSQ5 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Sp140Q6NSQ5 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Sp140Q6NSQ5 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Sp140Q6NSQ5 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Sp140Q6NSQ5 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Sp140Q6NSQ5 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Sp140Q6NSQ5 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Sp140Q6NSQ5 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Sp140Q6NSQ5 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Sp140Q6NSQ5 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Sp140Q6NSQ5 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Sp140Q6NSQ5 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Sp140Q6NSQ5 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Sp140Q6NSQ5 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Sp140Q6NSQ5 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Sp140Q6NSQ5 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC21.68■■□□□ 1.06
Sp140Q6NSQ5 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC21.68■■□□□ 1.06
Sp140Q6NSQ5 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC21.68■■□□□ 1.06
Sp140Q6NSQ5 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC21.68■■□□□ 1.06
Sp140Q6NSQ5 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC21.68■■□□□ 1.06
Sp140Q6NSQ5 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Sp140Q6NSQ5 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.68■■□□□ 1.06
Sp140Q6NSQ5 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Sp140Q6NSQ5 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Sp140Q6NSQ5 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
Sp140Q6NSQ5 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Sp140Q6NSQ5 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC21.67■■□□□ 1.06
Sp140Q6NSQ5 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Sp140Q6NSQ5 Nsd1-206ENSMUST00000224918 1001 ntBASIC21.67■■□□□ 1.06
Sp140Q6NSQ5 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Sp140Q6NSQ5 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.66■■□□□ 1.06
Sp140Q6NSQ5 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Sp140Q6NSQ5 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC21.66■■□□□ 1.06
Sp140Q6NSQ5 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Sp140Q6NSQ5 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 92 ms