Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav5d-4Q5R1F6 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav5d-4Q5R1F6 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav5d-4Q5R1F6 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trav5d-4Q5R1F6 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav5d-4Q5R1F6 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.41■□□□□ 0.54
Trav5d-4Q5R1F6 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trav5d-4Q5R1F6 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav5d-4Q5R1F6 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Trav5d-4Q5R1F6 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav5d-4Q5R1F6 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav5d-4Q5R1F6 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
Trav5d-4Q5R1F6 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trav5d-4Q5R1F6 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav5d-4Q5R1F6 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Trav5d-4Q5R1F6 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
Trav5d-4Q5R1F6 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Gm12366-201ENSMUST00000121722 873 ntBASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Gm5786-201ENSMUST00000085368 882 ntBASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav5d-4Q5R1F6 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC18.38■□□□□ 0.53
Trav5d-4Q5R1F6 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav5d-4Q5R1F6 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav5d-4Q5R1F6 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Trav5d-4Q5R1F6 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trav5d-4Q5R1F6 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav5d-4Q5R1F6 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav5d-4Q5R1F6 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Trav5d-4Q5R1F6 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trav5d-4Q5R1F6 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav5d-4Q5R1F6 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav5d-4Q5R1F6 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav5d-4Q5R1F6 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav5d-4Q5R1F6 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav5d-4Q5R1F6 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav5d-4Q5R1F6 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav5d-4Q5R1F6 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav5d-4Q5R1F6 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav5d-4Q5R1F6 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trav5d-4Q5R1F6 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav5d-4Q5R1F6 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav5d-4Q5R1F6 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav5d-4Q5R1F6 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC18.32■□□□□ 0.52
Trav5d-4Q5R1F6 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav5d-4Q5R1F6 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 71.3 ms