Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trav8d-2Q5R1B6 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav8d-2Q5R1B6 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC21.27■■□□□ 1
Trav8d-2Q5R1B6 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC21.27■■□□□ 1
Trav8d-2Q5R1B6 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trav8d-2Q5R1B6 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav8d-2Q5R1B6 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav8d-2Q5R1B6 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav8d-2Q5R1B6 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav8d-2Q5R1B6 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Trav8d-2Q5R1B6 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Trav8d-2Q5R1B6 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav8d-2Q5R1B6 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav8d-2Q5R1B6 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC21.26■□□□□ 0.99
Trav8d-2Q5R1B6 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Trav8d-2Q5R1B6 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trav8d-2Q5R1B6 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trav8d-2Q5R1B6 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.25■□□□□ 0.99
Trav8d-2Q5R1B6 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trav8d-2Q5R1B6 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Trav8d-2Q5R1B6 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trav8d-2Q5R1B6 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trav8d-2Q5R1B6 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trav8d-2Q5R1B6 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC21.24■□□□□ 0.99
Trav8d-2Q5R1B6 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav8d-2Q5R1B6 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav8d-2Q5R1B6 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC21.23■□□□□ 0.99
Trav8d-2Q5R1B6 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav8d-2Q5R1B6 Gm8495-201ENSMUST00000188740 694 ntBASIC21.23■□□□□ 0.99
Trav8d-2Q5R1B6 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav8d-2Q5R1B6 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav8d-2Q5R1B6 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav8d-2Q5R1B6 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav8d-2Q5R1B6 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.22■□□□□ 0.99
Trav8d-2Q5R1B6 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav8d-2Q5R1B6 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trav8d-2Q5R1B6 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav8d-2Q5R1B6 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.22■□□□□ 0.99
Trav8d-2Q5R1B6 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav8d-2Q5R1B6 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav8d-2Q5R1B6 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav8d-2Q5R1B6 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Trav8d-2Q5R1B6 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav8d-2Q5R1B6 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
Trav8d-2Q5R1B6 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav8d-2Q5R1B6 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.2■□□□□ 0.98
Trav8d-2Q5R1B6 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
Trav8d-2Q5R1B6 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav8d-2Q5R1B6 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.19■□□□□ 0.98
Trav8d-2Q5R1B6 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trav8d-2Q5R1B6 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav8d-2Q5R1B6 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav8d-2Q5R1B6 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav8d-2Q5R1B6 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav8d-2Q5R1B6 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC21.19■□□□□ 0.98
Trav8d-2Q5R1B6 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav8d-2Q5R1B6 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC21.18■□□□□ 0.98
Trav8d-2Q5R1B6 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trav8d-2Q5R1B6 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav8d-2Q5R1B6 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Trav8d-2Q5R1B6 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.18■□□□□ 0.98
Trav8d-2Q5R1B6 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav8d-2Q5R1B6 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Trav8d-2Q5R1B6 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav8d-2Q5R1B6 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav8d-2Q5R1B6 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav8d-2Q5R1B6 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC21.17■□□□□ 0.98
Trav8d-2Q5R1B6 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav8d-2Q5R1B6 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav8d-2Q5R1B6 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav8d-2Q5R1B6 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav8d-2Q5R1B6 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav8d-2Q5R1B6 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC21.16■□□□□ 0.98
Trav8d-2Q5R1B6 Gm18284-201ENSMUST00000172604 624 ntBASIC21.16■□□□□ 0.98
Trav8d-2Q5R1B6 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.15■□□□□ 0.98
Trav8d-2Q5R1B6 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav8d-2Q5R1B6 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC21.15■□□□□ 0.98
Trav8d-2Q5R1B6 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trav8d-2Q5R1B6 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav8d-2Q5R1B6 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav8d-2Q5R1B6 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trav8d-2Q5R1B6 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav8d-2Q5R1B6 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC21.14■□□□□ 0.97
Trav8d-2Q5R1B6 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.13■□□□□ 0.97
Trav8d-2Q5R1B6 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav8d-2Q5R1B6 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trav8d-2Q5R1B6 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav8d-2Q5R1B6 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC21.12■□□□□ 0.97
Trav8d-2Q5R1B6 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trav8d-2Q5R1B6 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav8d-2Q5R1B6 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav8d-2Q5R1B6 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav8d-2Q5R1B6 Gm28731-201ENSMUST00000185564 1569 ntBASIC21.11■□□□□ 0.97
Trav8d-2Q5R1B6 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav8d-2Q5R1B6 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Trav8d-2Q5R1B6 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC21.11■□□□□ 0.97
Trav8d-2Q5R1B6 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trav8d-2Q5R1B6 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav8d-2Q5R1B6 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav8d-2Q5R1B6 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms