Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clk4O35493 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clk4O35493 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clk4O35493 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clk4O35493 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clk4O35493 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clk4O35493 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Clk4O35493 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Clk4O35493 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Clk4O35493 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clk4O35493 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Clk4O35493 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clk4O35493 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clk4O35493 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clk4O35493 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clk4O35493 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clk4O35493 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Clk4O35493 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Clk4O35493 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.45■□□□□ 0.86
Clk4O35493 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Clk4O35493 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Clk4O35493 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.44■□□□□ 0.86
Clk4O35493 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.44■□□□□ 0.86
Clk4O35493 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Clk4O35493 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.44■□□□□ 0.86
Clk4O35493 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Clk4O35493 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Clk4O35493 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.44■□□□□ 0.86
Clk4O35493 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Clk4O35493 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Clk4O35493 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.43■□□□□ 0.86
Clk4O35493 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Clk4O35493 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Clk4O35493 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Clk4O35493 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Clk4O35493 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.42■□□□□ 0.86
Clk4O35493 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Clk4O35493 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Clk4O35493 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.42■□□□□ 0.86
Clk4O35493 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Clk4O35493 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.42■□□□□ 0.86
Clk4O35493 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Clk4O35493 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Clk4O35493 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Clk4O35493 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Clk4O35493 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Clk4O35493 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Clk4O35493 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Clk4O35493 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.41■□□□□ 0.86
Clk4O35493 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Clk4O35493 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Clk4O35493 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Clk4O35493 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.41■□□□□ 0.86
Clk4O35493 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.4■□□□□ 0.86
Clk4O35493 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Clk4O35493 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Clk4O35493 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Clk4O35493 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Clk4O35493 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Clk4O35493 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Clk4O35493 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Clk4O35493 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Clk4O35493 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Clk4O35493 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
Clk4O35493 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Clk4O35493 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Clk4O35493 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.39■□□□□ 0.85
Clk4O35493 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.39■□□□□ 0.85
Clk4O35493 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Clk4O35493 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.39■□□□□ 0.85
Clk4O35493 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Clk4O35493 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Clk4O35493 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Clk4O35493 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Clk4O35493 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Clk4O35493 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.38■□□□□ 0.85
Clk4O35493 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Clk4O35493 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Clk4O35493 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20.37■□□□□ 0.85
Clk4O35493 Gm45444-201ENSMUST00000211394 898 ntBASIC20.37■□□□□ 0.85
Clk4O35493 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Clk4O35493 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clk4O35493 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Clk4O35493 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.36■□□□□ 0.85
Clk4O35493 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
Clk4O35493 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clk4O35493 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC20.36■□□□□ 0.85
Clk4O35493 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Clk4O35493 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Clk4O35493 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 117.5 ms