Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.26■□□□□ 0.83
Clk3O35492 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clk3O35492 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clk3O35492 Notumos-201ENSMUST00000151998 2659 ntBASIC20.26■□□□□ 0.83
Clk3O35492 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clk3O35492 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clk3O35492 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Clk3O35492 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Clk3O35492 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clk3O35492 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC20.25■□□□□ 0.83
Clk3O35492 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.25■□□□□ 0.83
Clk3O35492 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.25■□□□□ 0.83
Clk3O35492 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.25■□□□□ 0.83
Clk3O35492 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clk3O35492 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clk3O35492 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clk3O35492 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clk3O35492 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Clk3O35492 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clk3O35492 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clk3O35492 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.23■□□□□ 0.83
Clk3O35492 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Clk3O35492 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.23■□□□□ 0.83
Clk3O35492 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Clk3O35492 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Clk3O35492 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Clk3O35492 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Clk3O35492 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Clk3O35492 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Clk3O35492 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Clk3O35492 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clk3O35492 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Clk3O35492 Gm27502-201ENSMUST00000183495 199 ntBASIC20.21■□□□□ 0.83
Clk3O35492 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.21■□□□□ 0.83
Clk3O35492 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clk3O35492 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clk3O35492 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clk3O35492 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Clk3O35492 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Clk3O35492 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Clk3O35492 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Clk3O35492 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.2■□□□□ 0.82
Clk3O35492 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Clk3O35492 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Clk3O35492 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.2■□□□□ 0.82
Clk3O35492 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Clk3O35492 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clk3O35492 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Clk3O35492 Gm14523-201ENSMUST00000117260 558 ntBASIC20.19■□□□□ 0.82
Clk3O35492 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clk3O35492 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clk3O35492 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Clk3O35492 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Clk3O35492 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Clk3O35492 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
Clk3O35492 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clk3O35492 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clk3O35492 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clk3O35492 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clk3O35492 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clk3O35492 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Clk3O35492 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Clk3O35492 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clk3O35492 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Clk3O35492 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.17■□□□□ 0.82
Clk3O35492 Gm12366-201ENSMUST00000121722 873 ntBASIC20.17■□□□□ 0.82
Clk3O35492 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Clk3O35492 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.17■□□□□ 0.82
Clk3O35492 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.17■□□□□ 0.82
Clk3O35492 Gm5786-201ENSMUST00000085368 882 ntBASIC20.17■□□□□ 0.82
Clk3O35492 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Clk3O35492 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Clk3O35492 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 Gm7332-201ENSMUST00000118351 454 ntBASIC20.16■□□□□ 0.82
Clk3O35492 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Clk3O35492 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
Clk3O35492 AC115037.1-201ENSMUST00000223391 2173 ntBASIC20.15■□□□□ 0.82
Clk3O35492 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clk3O35492 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clk3O35492 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.15■□□□□ 0.82
Clk3O35492 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.15■□□□□ 0.82
Clk3O35492 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clk3O35492 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clk3O35492 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clk3O35492 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.15■□□□□ 0.82
Clk3O35492 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Clk3O35492 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Clk3O35492 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Clk3O35492 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Clk3O35492 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Clk3O35492 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms