Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chd3B1AR17 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
Chd3B1AR17 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Chd3B1AR17 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chd3B1AR17 AC115037.1-201ENSMUST00000223391 2173 ntBASIC21.23■□□□□ 0.99
Chd3B1AR17 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chd3B1AR17 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Chd3B1AR17 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
Chd3B1AR17 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
Chd3B1AR17 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC21.23■□□□□ 0.99
Chd3B1AR17 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chd3B1AR17 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chd3B1AR17 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chd3B1AR17 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Chd3B1AR17 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.22■□□□□ 0.99
Chd3B1AR17 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Chd3B1AR17 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Chd3B1AR17 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chd3B1AR17 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Chd3B1AR17 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC21.21■□□□□ 0.99
Chd3B1AR17 Gm16464-201ENSMUST00000117815 1095 ntBASIC21.2■□□□□ 0.99
Chd3B1AR17 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Chd3B1AR17 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chd3B1AR17 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chd3B1AR17 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Chd3B1AR17 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Chd3B1AR17 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.2■□□□□ 0.98
Chd3B1AR17 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Chd3B1AR17 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
Chd3B1AR17 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
Chd3B1AR17 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Chd3B1AR17 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Chd3B1AR17 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Chd3B1AR17 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Chd3B1AR17 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Chd3B1AR17 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chd3B1AR17 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chd3B1AR17 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC21.18■□□□□ 0.98
Chd3B1AR17 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC21.18■□□□□ 0.98
Chd3B1AR17 Gm5131-201ENSMUST00000212776 1238 ntBASIC21.18■□□□□ 0.98
Chd3B1AR17 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Chd3B1AR17 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chd3B1AR17 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Chd3B1AR17 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chd3B1AR17 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chd3B1AR17 Gm8093-201ENSMUST00000128935 1892 ntBASIC21.18■□□□□ 0.98
Chd3B1AR17 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chd3B1AR17 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.17■□□□□ 0.98
Chd3B1AR17 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Chd3B1AR17 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chd3B1AR17 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Chd3B1AR17 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC21.17■□□□□ 0.98
Chd3B1AR17 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chd3B1AR17 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.16■□□□□ 0.98
Chd3B1AR17 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Chd3B1AR17 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Chd3B1AR17 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Chd3B1AR17 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC21.16■□□□□ 0.98
Chd3B1AR17 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chd3B1AR17 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Chd3B1AR17 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chd3B1AR17 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chd3B1AR17 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chd3B1AR17 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC21.15■□□□□ 0.98
Chd3B1AR17 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chd3B1AR17 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Chd3B1AR17 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Chd3B1AR17 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.14■□□□□ 0.98
Chd3B1AR17 Gm10399-202ENSMUST00000202768 748 ntBASIC21.14■□□□□ 0.98
Chd3B1AR17 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Chd3B1AR17 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Chd3B1AR17 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Chd3B1AR17 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21.13■□□□□ 0.97
Chd3B1AR17 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC21.13■□□□□ 0.97
Chd3B1AR17 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC21.13■□□□□ 0.97
Chd3B1AR17 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Chd3B1AR17 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Chd3B1AR17 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Chd3B1AR17 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC21.13■□□□□ 0.97
Chd3B1AR17 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Chd3B1AR17 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Chd3B1AR17 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Chd3B1AR17 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Chd3B1AR17 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.12■□□□□ 0.97
Chd3B1AR17 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Chd3B1AR17 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Chd3B1AR17 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Chd3B1AR17 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Chd3B1AR17 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Chd3B1AR17 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Chd3B1AR17 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Chd3B1AR17 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Chd3B1AR17 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Chd3B1AR17 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Chd3B1AR17 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC21.11■□□□□ 0.97
Chd3B1AR17 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Chd3B1AR17 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Chd3B1AR17 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Chd3B1AR17 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Chd3B1AR17 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 55.8 ms