Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Gm44158-201ENSMUST00000203881 505 ntBASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Gm40879-201ENSMUST00000220759 612 ntBASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Scn4aQ9ER60 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Scn4aQ9ER60 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Scn4aQ9ER60 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Scn4aQ9ER60 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Scn4aQ9ER60 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.45
Scn4aQ9ER60 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Scn4aQ9ER60 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Scn4aQ9ER60 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Gm14274-201ENSMUST00000117182 615 ntBASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Gm23085-201ENSMUST00000157849 293 ntBASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Gm19009-201ENSMUST00000223072 823 ntBASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Gm14005-208ENSMUST00000223654 681 ntBASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Rasl11a-201ENSMUST00000031646 1126 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Gm9129-201ENSMUST00000218173 1689 ntBASIC17.83■□□□□ 0.44
Scn4aQ9ER60 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Gm42657-201ENSMUST00000201746 211 ntBASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Gm5340-201ENSMUST00000203733 880 ntBASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Gm807-202ENSMUST00000224929 408 ntBASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Gm43823-201ENSMUST00000197391 1808 ntBASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Gm13549-201ENSMUST00000118339 796 ntBASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Gm18201-201ENSMUST00000174735 875 ntBASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Scn4aQ9ER60 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Gm18626-201ENSMUST00000221512 1409 ntBASIC17.81■□□□□ 0.44
Scn4aQ9ER60 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Gm12943-201ENSMUST00000119616 210 ntBASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Gm12516-201ENSMUST00000120819 385 ntBASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Scn4aQ9ER60 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Gm16296-201ENSMUST00000159905 325 ntBASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Gm15744-201ENSMUST00000161734 213 ntBASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms