Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Msh4Q99MT2 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC13.12□□□□□ -0.31
Msh4Q99MT2 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Msh4Q99MT2 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Msh4Q99MT2 AC154595.3-201ENSMUST00000224579 384 ntBASIC13.12□□□□□ -0.31
Msh4Q99MT2 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Msh4Q99MT2 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC13.11□□□□□ -0.31
Msh4Q99MT2 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC13.11□□□□□ -0.31
Msh4Q99MT2 Ighv1-51-201ENSMUST00000192903 354 ntBASIC13.11□□□□□ -0.31
Msh4Q99MT2 Gm37917-201ENSMUST00000194711 392 ntBASIC13.11□□□□□ -0.31
Msh4Q99MT2 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC13.11□□□□□ -0.31
Msh4Q99MT2 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Msh4Q99MT2 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Gm14928-201ENSMUST00000120198 477 ntBASIC13.1□□□□□ -0.31
Msh4Q99MT2 Gm19220-201ENSMUST00000222682 803 ntBASIC13.1□□□□□ -0.31
Msh4Q99MT2 AC140375.2-201ENSMUST00000225283 584 ntBASIC13.1□□□□□ -0.31
Msh4Q99MT2 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 AC139054.1-201ENSMUST00000226898 1598 ntBASIC13.1□□□□□ -0.31
Msh4Q99MT2 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Msh4Q99MT2 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Msh4Q99MT2 AC159196.2-201ENSMUST00000224082 1622 ntBASIC13.1□□□□□ -0.31
Msh4Q99MT2 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 69.3 ms