Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Gm10710-201ENSMUST00000047876 3971 ntBASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Mir692-1-201ENSMUST00000102263 109 ntBASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Gm15770-201ENSMUST00000117498 584 ntBASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Gm5356-201ENSMUST00000093326 615 ntBASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Grk6-205ENSMUST00000224653 2976 ntBASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ushbp1Q8R370 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ushbp1Q8R370 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ushbp1Q8R370 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ushbp1Q8R370 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ushbp1Q8R370 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ushbp1Q8R370 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ushbp1Q8R370 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ushbp1Q8R370 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ushbp1Q8R370 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ushbp1Q8R370 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ushbp1Q8R370 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
Ushbp1Q8R370 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC15.08■□□□□ 0
Ushbp1Q8R370 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Gm27772-201ENSMUST00000184900 187 ntBASIC15.08■□□□□ 0
Ushbp1Q8R370 Gm44799-201ENSMUST00000207639 1202 ntBASIC15.08■□□□□ 0
Ushbp1Q8R370 Gm17795-201ENSMUST00000214505 757 ntBASIC15.08■□□□□ 0
Ushbp1Q8R370 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC15.08■□□□□ 0
Ushbp1Q8R370 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC15.08■□□□□ 0
Ushbp1Q8R370 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Ushbp1Q8R370 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
Ushbp1Q8R370 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ushbp1Q8R370 AC154527.2-201ENSMUST00000225256 1466 ntBASIC15.08■□□□□ 0
Ushbp1Q8R370 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 75.2 ms