Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Trim47Q8C0E3 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Gm42929-201ENSMUST00000198374 1286 ntBASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Gm6091-201ENSMUST00000098307 165 ntBASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim47Q8C0E3 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Mup-ps23-201ENSMUST00000118063 630 ntBASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Proscos-202ENSMUST00000178990 666 ntBASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Gm27847-201ENSMUST00000183711 107 ntBASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Gm27375-201ENSMUST00000183799 107 ntBASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Ccl25-201ENSMUST00000024004 1058 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 AC114008.2-201ENSMUST00000227699 1347 ntBASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim47Q8C0E3 Zscan30-202ENSMUST00000224144 1458 ntBASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Gm11803-201ENSMUST00000119966 444 ntBASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim47Q8C0E3 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms