Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Nup98Q6PFD9 Gm4366-201ENSMUST00000201488 1342 ntBASIC15.58■□□□□ 0.09
Nup98Q6PFD9 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Nup98Q6PFD9 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Gm13492-201ENSMUST00000119772 665 ntBASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Gm29199-201ENSMUST00000187766 775 ntBASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Nup98Q6PFD9 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Gm18056-201ENSMUST00000207670 568 ntBASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Gm18061-201ENSMUST00000208350 562 ntBASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Gm18063-201ENSMUST00000208529 568 ntBASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Gm18052-201ENSMUST00000208750 559 ntBASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Gm7789-202ENSMUST00000211273 1400 ntBASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC15.57■□□□□ 0.08
Nup98Q6PFD9 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Gm22058-201ENSMUST00000083393 310 ntBASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nup98Q6PFD9 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Gm9025-201ENSMUST00000122415 1575 ntBASIC15.55■□□□□ 0.08
Nup98Q6PFD9 AC113060.1-201ENSMUST00000225689 1573 ntBASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Gm19963-201ENSMUST00000208413 1255 ntBASIC15.55■□□□□ 0.08
Nup98Q6PFD9 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 AC166095.1-201ENSMUST00000223731 1241 ntBASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms