Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC17.33■□□□□ 0.36
Trim28Q62318 Olfr284-202ENSMUST00000206647 966 ntBASIC17.33■□□□□ 0.36
Trim28Q62318 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC17.33■□□□□ 0.36
Trim28Q62318 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Trim28Q62318 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
Trim28Q62318 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trim28Q62318 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trim28Q62318 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC17.32■□□□□ 0.36
Trim28Q62318 Gm24548-201ENSMUST00000158650 108 ntBASIC17.32■□□□□ 0.36
Trim28Q62318 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Gm17208-201ENSMUST00000168388 535 ntBASIC17.32■□□□□ 0.36
Trim28Q62318 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Gm27516-201ENSMUST00000184237 98 ntBASIC17.32■□□□□ 0.36
Trim28Q62318 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trim28Q62318 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
Trim28Q62318 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Trim28Q62318 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim28Q62318 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC17.31■□□□□ 0.36
Trim28Q62318 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Trim28Q62318 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim28Q62318 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC17.31■□□□□ 0.36
Trim28Q62318 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC17.31■□□□□ 0.36
Trim28Q62318 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Trim28Q62318 Gm17383-201ENSMUST00000078739 1041 ntBASIC17.31■□□□□ 0.36
Trim28Q62318 n-R5s77-201ENSMUST00000083757 119 ntBASIC17.31■□□□□ 0.36
Trim28Q62318 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Trim28Q62318 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim28Q62318 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC17.31■□□□□ 0.36
Trim28Q62318 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim28Q62318 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Gm14723-201ENSMUST00000118686 215 ntBASIC17.3■□□□□ 0.36
Trim28Q62318 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim28Q62318 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC17.3■□□□□ 0.36
Trim28Q62318 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC17.3■□□□□ 0.36
Trim28Q62318 Gm8227-201ENSMUST00000223306 571 ntBASIC17.3■□□□□ 0.36
Trim28Q62318 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim28Q62318 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim28Q62318 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim28Q62318 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim28Q62318 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC17.29■□□□□ 0.36
Trim28Q62318 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms