Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Upf3aQ3ULJ3 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm22323-201ENSMUST00000103832 109 ntBASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm11658-201ENSMUST00000120913 1008 ntBASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm16479-201ENSMUST00000121706 932 ntBASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm2467-201ENSMUST00000182266 1010 ntBASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm6981-201ENSMUST00000182467 1008 ntBASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm37259-201ENSMUST00000193903 849 ntBASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm18056-201ENSMUST00000207670 568 ntBASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm18061-201ENSMUST00000208350 562 ntBASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm18063-201ENSMUST00000208529 568 ntBASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm18052-201ENSMUST00000208750 559 ntBASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Upf3aQ3ULJ3 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Gm7809-201ENSMUST00000153199 742 ntBASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 CT485787.1-201ENSMUST00000225617 968 ntBASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 AC022775.2-201ENSMUST00000227885 646 ntBASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Upf3aQ3ULJ3 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Upf3aQ3ULJ3 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms