Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col17a1Q07563 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col17a1Q07563 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col17a1Q07563 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col17a1Q07563 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC20.17■□□□□ 0.82
Col17a1Q07563 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC20.17■□□□□ 0.82
Col17a1Q07563 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC20.17■□□□□ 0.82
Col17a1Q07563 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
Col17a1Q07563 Mir8115-201ENSMUST00000184992 119 ntBASIC20.17■□□□□ 0.82
Col17a1Q07563 Gm9230-201ENSMUST00000188228 532 ntBASIC20.17■□□□□ 0.82
Col17a1Q07563 Gm9116-201ENSMUST00000192400 1018 ntBASIC20.17■□□□□ 0.82
Col17a1Q07563 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC20.17■□□□□ 0.82
Col17a1Q07563 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC20.17■□□□□ 0.82
Col17a1Q07563 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col17a1Q07563 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col17a1Q07563 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
Col17a1Q07563 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
Col17a1Q07563 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Col17a1Q07563 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Mir744-201ENSMUST00000103261 100 ntBASIC20.16■□□□□ 0.82
Col17a1Q07563 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Col17a1Q07563 Mir6941-201ENSMUST00000184711 59 ntBASIC20.16■□□□□ 0.82
Col17a1Q07563 Gm45481-201ENSMUST00000209717 877 ntBASIC20.16■□□□□ 0.82
Col17a1Q07563 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC20.16■□□□□ 0.82
Col17a1Q07563 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Col17a1Q07563 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col17a1Q07563 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.15■□□□□ 0.82
Col17a1Q07563 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Col17a1Q07563 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Col17a1Q07563 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Gm13809-201ENSMUST00000117921 597 ntBASIC20.15■□□□□ 0.82
Col17a1Q07563 Isg20-203ENSMUST00000120331 845 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Gm8199-201ENSMUST00000121323 823 ntBASIC20.15■□□□□ 0.82
Col17a1Q07563 Tsc22d3-204ENSMUST00000123898 952 ntTSL 5 BASIC20.15■□□□□ 0.82
Col17a1Q07563 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC20.15■□□□□ 0.82
Col17a1Q07563 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Gm23363-201ENSMUST00000175024 79 ntBASIC20.15■□□□□ 0.82
Col17a1Q07563 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Col17a1Q07563 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col17a1Q07563 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Col17a1Q07563 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Col17a1Q07563 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC20.14■□□□□ 0.82
Col17a1Q07563 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Col17a1Q07563 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Col17a1Q07563 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col17a1Q07563 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col17a1Q07563 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC20.14■□□□□ 0.81
Col17a1Q07563 Gm23596-201ENSMUST00000104304 132 ntBASIC20.14■□□□□ 0.81
Col17a1Q07563 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col17a1Q07563 Gm14999-201ENSMUST00000121039 624 ntBASIC20.14■□□□□ 0.81
Col17a1Q07563 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC20.14■□□□□ 0.81
Col17a1Q07563 Prrg2-211ENSMUST00000211337 676 ntTSL 3 BASIC20.14■□□□□ 0.81
Col17a1Q07563 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC20.14■□□□□ 0.81
Col17a1Q07563 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC20.14■□□□□ 0.81
Col17a1Q07563 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col17a1Q07563 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col17a1Q07563 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col17a1Q07563 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col17a1Q07563 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col17a1Q07563 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Col17a1Q07563 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC20.13■□□□□ 0.81
Col17a1Q07563 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Col17a1Q07563 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC20.13■□□□□ 0.81
Col17a1Q07563 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC20.13■□□□□ 0.81
Col17a1Q07563 Gm8018-201ENSMUST00000173536 789 ntBASIC20.13■□□□□ 0.81
Col17a1Q07563 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC20.13■□□□□ 0.81
Col17a1Q07563 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Col17a1Q07563 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC20.13■□□□□ 0.81
Col17a1Q07563 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Col17a1Q07563 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Col17a1Q07563 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms