Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC20.34■□□□□ 0.85
Cux1P53564 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC20.34■□□□□ 0.85
Cux1P53564 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC20.34■□□□□ 0.85
Cux1P53564 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cux1P53564 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC20.33■□□□□ 0.85
Cux1P53564 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Gm23200-201ENSMUST00000104379 132 ntBASIC20.33■□□□□ 0.85
Cux1P53564 Mir5120-201ENSMUST00000175020 78 ntBASIC20.33■□□□□ 0.85
Cux1P53564 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC20.33■□□□□ 0.85
Cux1P53564 Gm43138-201ENSMUST00000199123 708 ntBASIC20.33■□□□□ 0.85
Cux1P53564 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC20.33■□□□□ 0.85
Cux1P53564 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Cux1P53564 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Cux1P53564 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Cux1P53564 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cux1P53564 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Cux1P53564 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Cux1P53564 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Cux1P53564 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Cux1P53564 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC20.32■□□□□ 0.84
Cux1P53564 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Cux1P53564 Gstp-ps-201ENSMUST00000195526 631 ntBASIC20.32■□□□□ 0.84
Cux1P53564 Gm9678-201ENSMUST00000198979 1149 ntBASIC20.32■□□□□ 0.84
Cux1P53564 Gm8712-201ENSMUST00000221090 701 ntBASIC20.32■□□□□ 0.84
Cux1P53564 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Cux1P53564 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC20.32■□□□□ 0.84
Cux1P53564 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC20.32■□□□□ 0.84
Cux1P53564 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC20.32■□□□□ 0.84
Cux1P53564 Ighv5-7-201ENSMUST00000192302 244 ntBASIC20.32■□□□□ 0.84
Cux1P53564 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
Cux1P53564 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC20.32■□□□□ 0.84
Cux1P53564 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cux1P53564 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Cux1P53564 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Cux1P53564 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Cux1P53564 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC20.31■□□□□ 0.84
Cux1P53564 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC20.31■□□□□ 0.84
Cux1P53564 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC20.31■□□□□ 0.84
Cux1P53564 Gm4909-201ENSMUST00000118749 794 ntBASIC20.31■□□□□ 0.84
Cux1P53564 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC20.31■□□□□ 0.84
Cux1P53564 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC20.31■□□□□ 0.84
Cux1P53564 Gm25700-201ENSMUST00000177693 110 ntBASIC20.31■□□□□ 0.84
Cux1P53564 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cux1P53564 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC20.31■□□□□ 0.84
Cux1P53564 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms