Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Gm44241-201ENSMUST00000203230 1662 ntBASIC14.13□□□□□ -0.15
Usp4P35123 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp4P35123 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp4P35123 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Usp4P35123 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Usp4P35123 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp4P35123 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Usp4P35123 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp4P35123 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp4P35123 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC14.13□□□□□ -0.15
Usp4P35123 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Usp4P35123 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp4P35123 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp4P35123 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp4P35123 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Gm6539-201ENSMUST00000119157 1064 ntBASIC14.12□□□□□ -0.15
Usp4P35123 Gm11424-201ENSMUST00000121929 829 ntBASIC14.12□□□□□ -0.15
Usp4P35123 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC14.12□□□□□ -0.15
Usp4P35123 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
Usp4P35123 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Gm38294-201ENSMUST00000192831 381 ntBASIC14.12□□□□□ -0.15
Usp4P35123 Gm37714-201ENSMUST00000194742 342 ntBASIC14.12□□□□□ -0.15
Usp4P35123 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Usp4P35123 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 AC114543.1-201ENSMUST00000226451 1558 ntBASIC14.12□□□□□ -0.15
Usp4P35123 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Usp4P35123 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC14.12□□□□□ -0.15
Usp4P35123 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Gm42748-201ENSMUST00000199354 2341 ntBASIC14.12□□□□□ -0.15
Usp4P35123 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp4P35123 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Usp4P35123 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Usp4P35123 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Usp4P35123 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Usp4P35123 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC14.11□□□□□ -0.15
Usp4P35123 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Usp4P35123 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Usp4P35123 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp4P35123 Gm26616-202ENSMUST00000195676 3107 ntBASIC14.1□□□□□ -0.15
Usp4P35123 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Usp4P35123 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usp4P35123 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC14.1□□□□□ -0.15
Usp4P35123 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Usp4P35123 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC14.1□□□□□ -0.15
Usp4P35123 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usp4P35123 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usp4P35123 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usp4P35123 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Usp4P35123 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usp4P35123 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms