Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm22918-201ENSMUST00000103855 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm28018-201ENSMUST00000103869 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm26399-201ENSMUST00000103937 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC10.9□□□□□ -0.66
Cdx1P18111 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC10.9□□□□□ -0.66
Cdx1P18111 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC10.9□□□□□ -0.66
Cdx1P18111 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC10.9□□□□□ -0.66
Cdx1P18111 Gm25349-201ENSMUST00000177728 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm23616-201ENSMUST00000177797 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm25871-201ENSMUST00000177816 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm24752-201ENSMUST00000178240 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm24496-201ENSMUST00000178287 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm25649-201ENSMUST00000178476 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm25548-201ENSMUST00000178681 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm23147-201ENSMUST00000178841 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm26095-201ENSMUST00000179270 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm22171-201ENSMUST00000179283 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm23936-201ENSMUST00000179354 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm22619-201ENSMUST00000179516 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm25255-201ENSMUST00000179579 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm24755-201ENSMUST00000179691 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm26506-201ENSMUST00000179692 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm25086-201ENSMUST00000179931 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm23243-201ENSMUST00000180047 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm24659-201ENSMUST00000180212 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm24169-201ENSMUST00000180244 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm23689-201ENSMUST00000180354 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm27359-201ENSMUST00000184153 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm27785-201ENSMUST00000184268 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm27466-201ENSMUST00000184396 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm27703-201ENSMUST00000184836 110 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC10.9□□□□□ -0.66
Cdx1P18111 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx1P18111 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx1P18111 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx1P18111 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx1P18111 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx1P18111 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx1P18111 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx1P18111 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Gm10154-201ENSMUST00000084445 354 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx1P18111 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx1P18111 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx1P18111 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx1P18111 Gm44891-201ENSMUST00000208817 2223 ntBASIC10.9□□□□□ -0.66
Cdx1P18111 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC10.9□□□□□ -0.66
Cdx1P18111 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Cdx1P18111 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx1P18111 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cdx1P18111 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Cdx1P18111 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC10.9□□□□□ -0.67
Cdx1P18111 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cdx1P18111 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cdx1P18111 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
Cdx1P18111 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC10.89□□□□□ -0.67
Cdx1P18111 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Cdx1P18111 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Cdx1P18111 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Gm28386-201ENSMUST00000189147 1849 ntBASIC10.89□□□□□ -0.67
Cdx1P18111 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC10.89□□□□□ -0.67
Cdx1P18111 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC10.89□□□□□ -0.67
Cdx1P18111 Gm9385-201ENSMUST00000117563 472 ntBASIC10.89□□□□□ -0.67
Cdx1P18111 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC10.89□□□□□ -0.67
Cdx1P18111 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Cdx1P18111 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC10.89□□□□□ -0.67
Cdx1P18111 Gm22175-201ENSMUST00000175007 78 ntBASIC10.89□□□□□ -0.67
Cdx1P18111 Gm24158-201ENSMUST00000175263 71 ntBASIC10.89□□□□□ -0.67
Cdx1P18111 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC10.89□□□□□ -0.67
Cdx1P18111 Gm20949-201ENSMUST00000206478 952 ntBASIC10.89□□□□□ -0.67
Cdx1P18111 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC10.89□□□□□ -0.67
Cdx1P18111 AC131710.1-201ENSMUST00000228336 990 ntBASIC10.89□□□□□ -0.67
Cdx1P18111 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 AC025913.2-201ENSMUST00000220136 1766 ntBASIC10.89□□□□□ -0.67
Cdx1P18111 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Cdx1P18111 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Cdx1P18111 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cdx1P18111 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms