Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Col1a1P11087 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC15.55■□□□□ 0.08
Col1a1P11087 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Col1a1P11087 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Gm4760-201ENSMUST00000119663 1030 ntBASIC15.55■□□□□ 0.08
Col1a1P11087 Gm38297-201ENSMUST00000195122 1057 ntBASIC15.55■□□□□ 0.08
Col1a1P11087 Gm29787-201ENSMUST00000222129 849 ntBASIC15.55■□□□□ 0.08
Col1a1P11087 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Col1a1P11087 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
Col1a1P11087 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Col1a1P11087 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col1a1P11087 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Col1a1P11087 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Col1a1P11087 Gm22334-201ENSMUST00000158070 133 ntBASIC15.54■□□□□ 0.08
Col1a1P11087 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC15.54■□□□□ 0.08
Col1a1P11087 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Col1a1P11087 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Col1a1P11087 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Col1a1P11087 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Col1a1P11087 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Col1a1P11087 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Col1a1P11087 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Col1a1P11087 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Col1a1P11087 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Gm13492-201ENSMUST00000119772 665 ntBASIC15.53■□□□□ 0.08
Col1a1P11087 Gm14704-201ENSMUST00000120300 874 ntBASIC15.53■□□□□ 0.08
Col1a1P11087 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC15.53■□□□□ 0.08
Col1a1P11087 Gm6161-201ENSMUST00000121942 1102 ntBASIC15.53■□□□□ 0.08
Col1a1P11087 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC15.53■□□□□ 0.08
Col1a1P11087 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Col1a1P11087 Gm6254-201ENSMUST00000168178 1072 ntBASIC15.53■□□□□ 0.08
Col1a1P11087 Gm6153-201ENSMUST00000172004 1058 ntBASIC15.53■□□□□ 0.08
Col1a1P11087 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Col1a1P11087 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Col1a1P11087 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC15.53■□□□□ 0.08
Col1a1P11087 Gm5641-202ENSMUST00000198699 1080 ntBASIC15.53■□□□□ 0.08
Col1a1P11087 Gm8099-201ENSMUST00000200510 742 ntBASIC15.53■□□□□ 0.08
Col1a1P11087 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC15.53■□□□□ 0.08
Col1a1P11087 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Col1a1P11087 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC15.53■□□□□ 0.08
Col1a1P11087 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Gm42872-201ENSMUST00000200026 1967 ntBASIC15.53■□□□□ 0.08
Col1a1P11087 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC15.53■□□□□ 0.08
Col1a1P11087 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms