Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdc40Q9DC48 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdc40Q9DC48 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Cdc40Q9DC48 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdc40Q9DC48 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdc40Q9DC48 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdc40Q9DC48 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdc40Q9DC48 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
Cdc40Q9DC48 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Mir692-1-201ENSMUST00000102263 109 ntBASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Gm37748-201ENSMUST00000194379 1140 ntBASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Gm25857-201ENSMUST00000082788 129 ntBASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Zkscan14-203ENSMUST00000198959 2243 ntBASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdc40Q9DC48 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Gm8131-201ENSMUST00000213783 1570 ntBASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC12.52□□□□□ -0.4
Cdc40Q9DC48 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Gm12960-201ENSMUST00000120017 1066 ntBASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Gm15806-201ENSMUST00000120696 955 ntBASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Gm18307-201ENSMUST00000206864 949 ntBASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdc40Q9DC48 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms