Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ushbp1Q8R370 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Gm20632-201ENSMUST00000176760 2427 ntBASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Gm5303-201ENSMUST00000117943 1252 ntBASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Mir1982-201ENSMUST00000157368 74 ntBASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Gm14452-201ENSMUST00000118680 1632 ntBASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Gm42690-201ENSMUST00000197921 1836 ntBASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Gm8775-201ENSMUST00000170943 1327 ntBASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ushbp1Q8R370 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 AC131068.2-201ENSMUST00000226175 1453 ntBASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Gm38346-201ENSMUST00000192379 2639 ntBASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ushbp1Q8R370 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Gm28386-201ENSMUST00000189147 1849 ntBASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Gm12742-201ENSMUST00000117326 410 ntBASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 AC155252.1-201ENSMUST00000226462 1208 ntBASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 AC114008.2-201ENSMUST00000227699 1347 ntBASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ushbp1Q8R370 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms