Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Vps53Q8CCB4 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps53Q8CCB4 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Vps53Q8CCB4 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps53Q8CCB4 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps53Q8CCB4 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Vps53Q8CCB4 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC15.7■□□□□ 0.1
Vps53Q8CCB4 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Vps53Q8CCB4 AC114543.1-201ENSMUST00000226451 1558 ntBASIC15.7■□□□□ 0.1
Vps53Q8CCB4 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
Vps53Q8CCB4 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 AC159196.2-201ENSMUST00000224082 1622 ntBASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 AC150560.1-201ENSMUST00000227731 1187 ntBASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps53Q8CCB4 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 AC155252.1-201ENSMUST00000226462 1208 ntBASIC15.68■□□□□ 0.1
Vps53Q8CCB4 AC154806.6-201ENSMUST00000228192 202 ntBASIC15.68■□□□□ 0.1
Vps53Q8CCB4 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Gm14452-201ENSMUST00000118680 1632 ntBASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Vps53Q8CCB4 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Gm30238-201ENSMUST00000195528 2603 ntBASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Il17rd-203ENSMUST00000225146 3366 ntBASIC15.67■□□□□ 0.1
Vps53Q8CCB4 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Gm27892-201ENSMUST00000185017 106 ntBASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Mir7654-201ENSMUST00000185082 70 ntBASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Gm6007-201ENSMUST00000208170 823 ntBASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Vps53Q8CCB4 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms