Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Hist1h2al-201ENSMUST00000091708 339 ntBASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC13.7□□□□□ -0.22
Sh3rf1Q69ZI1 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Gm12490-201ENSMUST00000120255 560 ntBASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Gm15823-201ENSMUST00000064305 670 ntBASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sh3rf1Q69ZI1 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Gm14127-201ENSMUST00000117906 678 ntBASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Gm3436-201ENSMUST00000179930 840 ntBASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Gm45453-201ENSMUST00000211758 853 ntBASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 CT030704.2-201ENSMUST00000228887 494 ntBASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Gm27196-201ENSMUST00000184787 2582 ntBASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sh3rf1Q69ZI1 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
Sh3rf1Q69ZI1 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms