Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm13813-201ENSMUST00000120998 787 ntBASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC14.76□□□□□ -0.05
Col11a1Q61245 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm19353-201ENSMUST00000184561 445 ntBASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC14.76□□□□□ -0.05
Col11a1Q61245 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Col11a1Q61245 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm8018-201ENSMUST00000173536 789 ntBASIC14.76□□□□□ -0.05
Col11a1Q61245 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC14.76□□□□□ -0.05
Col11a1Q61245 Gm32999-201ENSMUST00000192693 562 ntBASIC14.76□□□□□ -0.05
Col11a1Q61245 AC154222.2-201ENSMUST00000225848 607 ntBASIC14.76□□□□□ -0.05
Col11a1Q61245 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC14.75□□□□□ -0.05
Col11a1Q61245 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC14.75□□□□□ -0.05
Col11a1Q61245 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Gm12266-201ENSMUST00000120311 962 ntBASIC14.75□□□□□ -0.05
Col11a1Q61245 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC14.75□□□□□ -0.05
Col11a1Q61245 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Gm8365-201ENSMUST00000197334 648 ntBASIC14.75□□□□□ -0.05
Col11a1Q61245 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col11a1Q61245 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col11a1Q61245 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Col11a1Q61245 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC14.74□□□□□ -0.05
Col11a1Q61245 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC14.74□□□□□ -0.05
Col11a1Q61245 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Gm17812-201ENSMUST00000204935 318 ntBASIC14.74□□□□□ -0.05
Col11a1Q61245 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Col11a1Q61245 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC14.74□□□□□ -0.05
Col11a1Q61245 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC14.74□□□□□ -0.05
Col11a1Q61245 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Col11a1Q61245 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col11a1Q61245 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 109.8 ms