Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Gm2810-201ENSMUST00000118681 990 ntBASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Wdyhv1-203ENSMUST00000226889 394 ntBASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col28a1Q2UY11 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Gm9824-201ENSMUST00000178707 561 ntBASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Mir8102-201ENSMUST00000184148 139 ntBASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 AC149294.4-201ENSMUST00000227870 882 ntBASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Rbfox2-208ENSMUST00000227930 1218 ntBASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC13.11□□□□□ -0.31
Col28a1Q2UY11 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 BC001981-202ENSMUST00000191393 1545 ntBASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Gm13823-201ENSMUST00000119930 345 ntBASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Gm38225-201ENSMUST00000194001 393 ntBASIC13.1□□□□□ -0.31
Col28a1Q2UY11 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Gm6888-201ENSMUST00000221983 706 ntBASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col28a1Q2UY11 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms