Protein–RNA interactions for Protein: P29595

Nedd8, NEDD8, mousemouse

Predictions only

Length 81 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nedd8P29595 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nedd8P29595 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nedd8P29595 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
Nedd8P29595 AC241621.2-201ENSMUST00000223991 2151 ntBASIC12.43□□□□□ -0.42
Nedd8P29595 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Nedd8P29595 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Nedd8P29595 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nedd8P29595 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.43□□□□□ -0.42
Nedd8P29595 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nedd8P29595 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nedd8P29595 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.43□□□□□ -0.42
Nedd8P29595 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nedd8P29595 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.43□□□□□ -0.42
Nedd8P29595 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Nedd8P29595 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC12.42□□□□□ -0.42
Nedd8P29595 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC12.42□□□□□ -0.42
Nedd8P29595 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC12.42□□□□□ -0.42
Nedd8P29595 Gm29741-201ENSMUST00000192667 421 ntBASIC12.42□□□□□ -0.42
Nedd8P29595 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC12.42□□□□□ -0.42
Nedd8P29595 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC12.42□□□□□ -0.42
Nedd8P29595 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Nedd8P29595 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Nedd8P29595 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC12.42□□□□□ -0.42
Nedd8P29595 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.42□□□□□ -0.42
Nedd8P29595 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Nedd8P29595 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
Nedd8P29595 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.42□□□□□ -0.42
Nedd8P29595 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC12.41□□□□□ -0.42
Nedd8P29595 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.41□□□□□ -0.42
Nedd8P29595 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Nedd8P29595 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Nedd8P29595 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
Nedd8P29595 Gm43051-201ENSMUST00000201096 2678 ntBASIC12.41□□□□□ -0.42
Nedd8P29595 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Gm15957-201ENSMUST00000118893 974 ntBASIC12.41□□□□□ -0.42
Nedd8P29595 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Nedd8P29595 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
Nedd8P29595 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
Nedd8P29595 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC12.41□□□□□ -0.42
Nedd8P29595 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Nedd8P29595 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Nedd8P29595 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Nedd8P29595 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Nedd8P29595 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.4□□□□□ -0.42
Nedd8P29595 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nedd8P29595 CT025626.1-201ENSMUST00000223735 1455 ntBASIC12.4□□□□□ -0.42
Nedd8P29595 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nedd8P29595 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nedd8P29595 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC12.4□□□□□ -0.42
Nedd8P29595 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Nedd8P29595 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Nedd8P29595 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC12.4□□□□□ -0.42
Nedd8P29595 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nedd8P29595 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Nedd8P29595 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Nedd8P29595 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms