Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Gm43134-201ENSMUST00000199434 1886 ntBASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lima1Q9ERG0 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Gm7774-201ENSMUST00000200064 533 ntBASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC13.35□□□□□ -0.27
Lima1Q9ERG0 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 AC116503.1-201ENSMUST00000215445 2192 ntBASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Gm8775-201ENSMUST00000170943 1327 ntBASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lima1Q9ERG0 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 AC139350.3-201ENSMUST00000226151 420 ntBASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lima1Q9ERG0 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Lima1Q9ERG0 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Gm8337-201ENSMUST00000187358 1938 ntBASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Gm7336-201ENSMUST00000107041 1232 ntBASIC13.33□□□□□ -0.28
Lima1Q9ERG0 Gm6415-201ENSMUST00000118488 348 ntBASIC13.33□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms