Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Gm12218-201ENSMUST00000117666 399 ntBASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Gm16166-201ENSMUST00000118291 787 ntBASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Gm4879-201ENSMUST00000122190 1272 ntBASIC17.91■□□□□ 0.46
Scn4aQ9ER60 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Ighv8-10-201ENSMUST00000199579 358 ntBASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Gm13539-202ENSMUST00000211245 552 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 AC139350.1-201ENSMUST00000227064 1594 ntBASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn4aQ9ER60 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Gm12620-201ENSMUST00000119791 1986 ntBASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Gm12612-201ENSMUST00000140182 1986 ntBASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Gm28882-201ENSMUST00000185504 314 ntBASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Gm18204-201ENSMUST00000209835 793 ntBASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Gm18706-201ENSMUST00000210053 1066 ntBASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Gm7278-201ENSMUST00000119836 1401 ntBASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Gm13384-201ENSMUST00000117166 1344 ntBASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn4aQ9ER60 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
Scn4aQ9ER60 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Scn4aQ9ER60 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Efs-202ENSMUST00000227037 2540 ntBASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Gm13182-201ENSMUST00000122241 312 ntBASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn4aQ9ER60 Gm16071-201ENSMUST00000119589 793 ntBASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Gm17826-201ENSMUST00000189720 798 ntBASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Gm6905-201ENSMUST00000205729 511 ntBASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Gm13809-201ENSMUST00000117921 597 ntBASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Gm15595-201ENSMUST00000120840 961 ntBASIC17.88■□□□□ 0.45
Scn4aQ9ER60 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Gm9230-201ENSMUST00000188228 532 ntBASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Gm5733-201ENSMUST00000190232 939 ntBASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn4aQ9ER60 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms