Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Gm4782-201ENSMUST00000168705 2046 ntBASIC15.92■□□□□ 0.14
Trim56Q80VI1 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Gm28386-201ENSMUST00000189147 1849 ntBASIC15.92■□□□□ 0.14
Trim56Q80VI1 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Gm6152-201ENSMUST00000151704 340 ntBASIC15.92■□□□□ 0.14
Trim56Q80VI1 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC15.92■□□□□ 0.14
Trim56Q80VI1 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC15.92■□□□□ 0.14
Trim56Q80VI1 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC15.92■□□□□ 0.14
Trim56Q80VI1 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC15.91■□□□□ 0.14
Trim56Q80VI1 Gm38671-201ENSMUST00000200573 130 ntBASIC15.91■□□□□ 0.14
Trim56Q80VI1 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Itm2b-204ENSMUST00000228637 783 ntBASIC15.91■□□□□ 0.14
Trim56Q80VI1 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Gm9816-201ENSMUST00000122292 1414 ntBASIC15.91■□□□□ 0.14
Trim56Q80VI1 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Trim56Q80VI1 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Gm27839-201ENSMUST00000184242 106 ntBASIC15.9■□□□□ 0.14
Trim56Q80VI1 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC15.9■□□□□ 0.14
Trim56Q80VI1 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Gm10012-201ENSMUST00000078252 192 ntBASIC15.9■□□□□ 0.14
Trim56Q80VI1 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Trim56Q80VI1 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.89■□□□□ 0.14
Trim56Q80VI1 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Trim56Q80VI1 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms