Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Nr1h4Q60641 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Gm11779-201ENSMUST00000118541 368 ntBASIC12.88□□□□□ -0.35
Nr1h4Q60641 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC12.88□□□□□ -0.35
Nr1h4Q60641 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.88□□□□□ -0.35
Nr1h4Q60641 Gm6916-202ENSMUST00000205523 195 ntBASIC12.88□□□□□ -0.35
Nr1h4Q60641 Gm18934-201ENSMUST00000216671 1044 ntBASIC12.88□□□□□ -0.35
Nr1h4Q60641 Gm16476-201ENSMUST00000221544 139 ntBASIC12.88□□□□□ -0.35
Nr1h4Q60641 Dupd1-202ENSMUST00000224735 548 ntBASIC12.88□□□□□ -0.35
Nr1h4Q60641 AC090659.2-201ENSMUST00000225378 1186 ntBASIC12.88□□□□□ -0.35
Nr1h4Q60641 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Gm7899-201ENSMUST00000192935 1897 ntBASIC12.88□□□□□ -0.35
Nr1h4Q60641 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Nr1h4Q60641 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 H2af-ps-201ENSMUST00000119066 295 ntBASIC12.87□□□□□ -0.35
Nr1h4Q60641 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Gm33320-201ENSMUST00000192232 530 ntBASIC12.87□□□□□ -0.35
Nr1h4Q60641 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Gm42706-201ENSMUST00000199733 1910 ntBASIC12.87□□□□□ -0.35
Nr1h4Q60641 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
Nr1h4Q60641 Gm20632-201ENSMUST00000176760 2427 ntBASIC12.87□□□□□ -0.35
Nr1h4Q60641 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC12.86□□□□□ -0.35
Nr1h4Q60641 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC12.86□□□□□ -0.35
Nr1h4Q60641 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms