Protein–RNA interactions for Protein: P70271

Pdlim4, PDZ and LIM domain protein 4, mousemouse

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim4P70271 Zkscan14-203ENSMUST00000198959 2243 ntBASIC11.28□□□□□ -0.6
Pdlim4P70271 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pdlim4P70271 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pdlim4P70271 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pdlim4P70271 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Pdlim4P70271 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Pdlim4P70271 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
Pdlim4P70271 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
Pdlim4P70271 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC11.27□□□□□ -0.6
Pdlim4P70271 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Pdlim4P70271 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Pdlim4P70271 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Pdlim4P70271 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Pdlim4P70271 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Pdlim4P70271 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Pdlim4P70271 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Pdlim4P70271 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Pdlim4P70271 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Pdlim4P70271 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Pdlim4P70271 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Gm4971-201ENSMUST00000205991 1108 ntBASIC11.27□□□□□ -0.61
Pdlim4P70271 Gm2423-201ENSMUST00000074863 733 ntBASIC11.27□□□□□ -0.61
Pdlim4P70271 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Pdlim4P70271 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Pdlim4P70271 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Gm30238-201ENSMUST00000195528 2603 ntBASIC11.26□□□□□ -0.61
Pdlim4P70271 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Ldb3-207ENSMUST00000227819 1499 ntBASIC11.26□□□□□ -0.61
Pdlim4P70271 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Pdlim4P70271 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Gm31326-201ENSMUST00000191856 1048 ntBASIC11.26□□□□□ -0.61
Pdlim4P70271 Gm42612-201ENSMUST00000197986 623 ntBASIC11.26□□□□□ -0.61
Pdlim4P70271 Gm43170-201ENSMUST00000199827 612 ntBASIC11.26□□□□□ -0.61
Pdlim4P70271 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC11.26□□□□□ -0.61
Pdlim4P70271 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Pdlim4P70271 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Pdlim4P70271 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Pdlim4P70271 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Pdlim4P70271 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Pdlim4P70271 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Pdlim4P70271 Gm8337-201ENSMUST00000187358 1938 ntBASIC11.25□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms