Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC15.62■□□□□ 0.09
Col1a1P11087 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Col1a1P11087 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col1a1P11087 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.62■□□□□ 0.09
Col1a1P11087 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Col1a1P11087 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Gm12217-201ENSMUST00000118858 696 ntBASIC15.61■□□□□ 0.09
Col1a1P11087 Gm12566-201ENSMUST00000121479 359 ntBASIC15.61■□□□□ 0.09
Col1a1P11087 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Gm25732-201ENSMUST00000175168 60 ntBASIC15.61■□□□□ 0.09
Col1a1P11087 Gm43947-201ENSMUST00000203019 959 ntBASIC15.61■□□□□ 0.09
Col1a1P11087 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
Col1a1P11087 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC15.61■□□□□ 0.09
Col1a1P11087 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.61■□□□□ 0.09
Col1a1P11087 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.61■□□□□ 0.09
Col1a1P11087 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC15.61■□□□□ 0.09
Col1a1P11087 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Col1a1P11087 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col1a1P11087 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Col1a1P11087 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Col1a1P11087 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC15.6■□□□□ 0.09
Col1a1P11087 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
Col1a1P11087 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
Col1a1P11087 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Gm5597-201ENSMUST00000182353 1193 ntBASIC15.6■□□□□ 0.09
Col1a1P11087 Gm2546-201ENSMUST00000182630 991 ntBASIC15.6■□□□□ 0.09
Col1a1P11087 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC15.6■□□□□ 0.09
Col1a1P11087 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC15.6■□□□□ 0.09
Col1a1P11087 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC15.6■□□□□ 0.09
Col1a1P11087 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Gm8885-201ENSMUST00000189382 598 ntBASIC15.6■□□□□ 0.09
Col1a1P11087 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Col1a1P11087 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Col1a1P11087 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col1a1P11087 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Gm12502-201ENSMUST00000120197 444 ntBASIC15.59■□□□□ 0.09
Col1a1P11087 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC15.59■□□□□ 0.09
Col1a1P11087 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Mir6927-201ENSMUST00000184494 71 ntBASIC15.59■□□□□ 0.09
Col1a1P11087 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC15.59■□□□□ 0.09
Col1a1P11087 Gm44772-201ENSMUST00000207623 1191 ntBASIC15.59■□□□□ 0.09
Col1a1P11087 Gm19963-201ENSMUST00000208413 1255 ntBASIC15.59■□□□□ 0.09
Col1a1P11087 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.59■□□□□ 0.09
Col1a1P11087 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC15.59■□□□□ 0.09
Col1a1P11087 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC15.59■□□□□ 0.09
Col1a1P11087 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 56 ms