Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Ehd2-201ENSMUST00000098799 5119 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hmgb3O54879 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC11.16□□□□□ -0.62
Hmgb3O54879 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC11.16□□□□□ -0.62
Hmgb3O54879 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Gm28033-201ENSMUST00000184224 96 ntBASIC11.16□□□□□ -0.62
Hmgb3O54879 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC11.16□□□□□ -0.62
Hmgb3O54879 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC11.16□□□□□ -0.62
Hmgb3O54879 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Birc2-201ENSMUST00000054878 378 ntBASIC11.16□□□□□ -0.62
Hmgb3O54879 Gm15590-201ENSMUST00000078419 552 ntBASIC11.16□□□□□ -0.62
Hmgb3O54879 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Gm3294-201ENSMUST00000164104 7367 ntTSL 3 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Dnmt3a-203ENSMUST00000111186 5424 ntAPPRIS P3 TSL 5 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Hmgb3O54879 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hmgb3O54879 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Nos1-206ENSMUST00000142742 10123 ntAPPRIS P2 TSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Gm27196-201ENSMUST00000184787 2582 ntBASIC11.15□□□□□ -0.62
Hmgb3O54879 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Svil-211ENSMUST00000143254 6594 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Gm9385-201ENSMUST00000117563 472 ntBASIC11.15□□□□□ -0.62
Hmgb3O54879 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Gm7862-201ENSMUST00000121461 292 ntBASIC11.15□□□□□ -0.62
Hmgb3O54879 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Gm27301-201ENSMUST00000184012 127 ntBASIC11.15□□□□□ -0.62
Hmgb3O54879 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Hmgb3O54879 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC11.15□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 97.9 ms