Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 AC131997.1-201ENSMUST00000228611 1229 ntBASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC12.18□□□□□ -0.46
Pcdh1F7BJK1 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 AC168058.1-201ENSMUST00000219521 2282 ntBASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Gm14822-201ENSMUST00000122247 291 ntBASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Pcdh1F7BJK1 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Gm4995-201ENSMUST00000117247 432 ntBASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Gm13365-201ENSMUST00000121188 973 ntBASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Gm6736-201ENSMUST00000166583 948 ntBASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Pcdh1F7BJK1 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC12.15□□□□□ -0.46
Pcdh1F7BJK1 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Pcdh1F7BJK1 AC122314.1-201ENSMUST00000223056 2239 ntBASIC12.15□□□□□ -0.46
Pcdh1F7BJK1 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms