Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Trim3Q9R1R2 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Gm9522-201ENSMUST00000182394 926 ntBASIC12.76□□□□□ -0.37
Trim3Q9R1R2 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Gm44855-201ENSMUST00000205725 362 ntBASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Hist1h2al-201ENSMUST00000091708 339 ntBASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trim3Q9R1R2 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Gm7488-201ENSMUST00000117148 684 ntBASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Gm37714-201ENSMUST00000194742 342 ntBASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Wdyhv1-206ENSMUST00000227142 786 ntBASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim3Q9R1R2 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Gm37644-201ENSMUST00000192190 2270 ntBASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Trim3Q9R1R2 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms