Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC15.95■□□□□ 0.14
Trim56Q80VI1 AC110817.1-201ENSMUST00000225706 605 ntBASIC15.95■□□□□ 0.14
Trim56Q80VI1 AC132467.2-202ENSMUST00000227726 559 ntBASIC15.95■□□□□ 0.14
Trim56Q80VI1 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC15.95■□□□□ 0.14
Trim56Q80VI1 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC15.95■□□□□ 0.14
Trim56Q80VI1 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Trim56Q80VI1 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC15.94■□□□□ 0.14
Trim56Q80VI1 AC154262.2-201ENSMUST00000224310 2293 ntBASIC15.94■□□□□ 0.14
Trim56Q80VI1 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Gm42929-201ENSMUST00000198374 1286 ntBASIC15.94■□□□□ 0.14
Trim56Q80VI1 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC15.94■□□□□ 0.14
Trim56Q80VI1 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trim56Q80VI1 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Gm5303-201ENSMUST00000117943 1252 ntBASIC15.93■□□□□ 0.14
Trim56Q80VI1 Gm13612-201ENSMUST00000119276 390 ntBASIC15.93■□□□□ 0.14
Trim56Q80VI1 Mir1894-201ENSMUST00000122802 81 ntBASIC15.93■□□□□ 0.14
Trim56Q80VI1 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Gm8652-201ENSMUST00000181363 964 ntBASIC15.93■□□□□ 0.14
Trim56Q80VI1 Gm8602-201ENSMUST00000184045 607 ntBASIC15.93■□□□□ 0.14
Trim56Q80VI1 Gm44487-201ENSMUST00000205145 325 ntBASIC15.93■□□□□ 0.14
Trim56Q80VI1 Gm18473-201ENSMUST00000220543 868 ntBASIC15.93■□□□□ 0.14
Trim56Q80VI1 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trim56Q80VI1 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trim56Q80VI1 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms