Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Col9a1Q05722 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a1Q05722 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a1Q05722 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a1Q05722 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a1Q05722 Gm18244-201ENSMUST00000219747 1566 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Olfr114-203ENSMUST00000216249 1457 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Ntm-202ENSMUST00000115236 1072 ntTSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm11930-201ENSMUST00000117788 190 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm12600-201ENSMUST00000146704 708 ntTSL 3 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Rmrp-201ENSMUST00000157463 271 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm24548-201ENSMUST00000158650 108 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm27046-201ENSMUST00000182160 463 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm36966-201ENSMUST00000192217 413 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm37028-201ENSMUST00000194276 107 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm34023-201ENSMUST00000195539 217 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Rps2-ps12-201ENSMUST00000214262 785 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm19990-201ENSMUST00000219468 1224 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Gm5513-201ENSMUST00000072982 1218 ntBASIC13.32□□□□□ -0.28
Col9a1Q05722 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC13.32□□□□□ -0.28
Col9a1Q05722 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col9a1Q05722 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Col9a1Q05722 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC13.31□□□□□ -0.28
Col9a1Q05722 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Col9a1Q05722 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC13.31□□□□□ -0.28
Col9a1Q05722 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm11618-201ENSMUST00000117946 267 ntBASIC13.31□□□□□ -0.28
Col9a1Q05722 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm12266-201ENSMUST00000120311 962 ntBASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm8908-201ENSMUST00000121633 1024 ntBASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC13.31□□□□□ -0.28
Col9a1Q05722 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm17040-202ENSMUST00000170597 889 ntBASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm17391-201ENSMUST00000171036 126 ntBASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm25700-201ENSMUST00000177693 110 ntBASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm37517-201ENSMUST00000194004 1289 ntBASIC13.31□□□□□ -0.28
Col9a1Q05722 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Gm17330-201ENSMUST00000221047 165 ntBASIC13.31□□□□□ -0.28
Col9a1Q05722 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col9a1Q05722 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col9a1Q05722 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms