Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col6a1Q04857 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col6a1Q04857 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col6a1Q04857 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col6a1Q04857 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col6a1Q04857 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC14.94□□□□□ -0.02
Col6a1Q04857 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Col6a1Q04857 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col6a1Q04857 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Col6a1Q04857 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col6a1Q04857 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col6a1Q04857 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col6a1Q04857 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.93□□□□□ -0.02
Col6a1Q04857 Gm5687-201ENSMUST00000118252 640 ntBASIC14.93□□□□□ -0.02
Col6a1Q04857 Gm12749-201ENSMUST00000122138 1159 ntBASIC14.93□□□□□ -0.02
Col6a1Q04857 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.93□□□□□ -0.02
Col6a1Q04857 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Col6a1Q04857 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col6a1Q04857 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.92□□□□□ -0.02
Col6a1Q04857 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 AC161252.3-201ENSMUST00000225465 1549 ntBASIC14.92□□□□□ -0.02
Col6a1Q04857 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Col6a1Q04857 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC14.92□□□□□ -0.02
Col6a1Q04857 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC14.92□□□□□ -0.02
Col6a1Q04857 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.92□□□□□ -0.02
Col6a1Q04857 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Col6a1Q04857 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.92□□□□□ -0.02
Col6a1Q04857 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col6a1Q04857 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Col6a1Q04857 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC14.91□□□□□ -0.02
Col6a1Q04857 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Col6a1Q04857 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.91□□□□□ -0.02
Col6a1Q04857 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Gm26927-201ENSMUST00000182385 965 ntBASIC14.91□□□□□ -0.02
Col6a1Q04857 Gm29396-201ENSMUST00000185659 716 ntBASIC14.91□□□□□ -0.02
Col6a1Q04857 Gm42550-201ENSMUST00000201553 960 ntBASIC14.91□□□□□ -0.02
Col6a1Q04857 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.91□□□□□ -0.02
Col6a1Q04857 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Col6a1Q04857 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Col6a1Q04857 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col6a1Q04857 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 75.7 ms