Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col8a1Q00780 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col8a1Q00780 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col8a1Q00780 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col8a1Q00780 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col8a1Q00780 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Col8a1Q00780 Camk2g-217ENSMUST00000226630 1937 ntBASIC11.54□□□□□ -0.56
Col8a1Q00780 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Gm25261-201ENSMUST00000157416 134 ntBASIC11.54□□□□□ -0.56
Col8a1Q00780 Gm25927-201ENSMUST00000175058 117 ntBASIC11.54□□□□□ -0.56
Col8a1Q00780 Mir6979-201ENSMUST00000183927 56 ntBASIC11.54□□□□□ -0.56
Col8a1Q00780 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 AC132384.14-201ENSMUST00000219346 1147 ntBASIC11.54□□□□□ -0.56
Col8a1Q00780 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Gm8227-201ENSMUST00000223306 571 ntBASIC11.54□□□□□ -0.56
Col8a1Q00780 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Gm5620-201ENSMUST00000077991 1348 ntBASIC11.54□□□□□ -0.56
Col8a1Q00780 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col8a1Q00780 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC11.54□□□□□ -0.56
Col8a1Q00780 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC11.53□□□□□ -0.56
Col8a1Q00780 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Gm8706-201ENSMUST00000197372 1491 ntBASIC11.53□□□□□ -0.56
Col8a1Q00780 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Col8a1Q00780 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC11.53□□□□□ -0.56
Col8a1Q00780 B9d1os-201ENSMUST00000137010 674 ntBASIC11.53□□□□□ -0.56
Col8a1Q00780 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC11.53□□□□□ -0.56
Col8a1Q00780 CT030182.1-201ENSMUST00000225935 533 ntBASIC11.53□□□□□ -0.56
Col8a1Q00780 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Mir497b-201ENSMUST00000093601 125 ntBASIC11.53□□□□□ -0.56
Col8a1Q00780 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Gm9333-201ENSMUST00000205452 1323 ntBASIC11.53□□□□□ -0.56
Col8a1Q00780 Fbxl12-205ENSMUST00000140702 1555 ntBASIC11.53□□□□□ -0.56
Col8a1Q00780 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Col8a1Q00780 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col8a1Q00780 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
Col8a1Q00780 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col8a1Q00780 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC11.52□□□□□ -0.56
Col8a1Q00780 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col8a1Q00780 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col8a1Q00780 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC11.52□□□□□ -0.56
Col8a1Q00780 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col8a1Q00780 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Col8a1Q00780 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Col8a1Q00780 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col8a1Q00780 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms