Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Scn1bP97952 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC12.36□□□□□ -0.43
Scn1bP97952 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Scn1bP97952 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Scn1bP97952 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.36□□□□□ -0.43
Scn1bP97952 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Scn1bP97952 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC12.36□□□□□ -0.43
Scn1bP97952 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Scn1bP97952 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC12.36□□□□□ -0.43
Scn1bP97952 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Scn1bP97952 Gm38385-201ENSMUST00000194454 2351 ntBASIC12.35□□□□□ -0.43
Scn1bP97952 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
Scn1bP97952 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Scn1bP97952 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Scn1bP97952 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC12.35□□□□□ -0.43
Scn1bP97952 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC12.35□□□□□ -0.43
Scn1bP97952 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
Scn1bP97952 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Scn1bP97952 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Scn1bP97952 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Scn1bP97952 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Scn1bP97952 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Scn1bP97952 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Scn1bP97952 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Scn1bP97952 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC12.34□□□□□ -0.43
Scn1bP97952 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC12.34□□□□□ -0.43
Scn1bP97952 Gm13597-201ENSMUST00000121239 375 ntBASIC12.34□□□□□ -0.43
Scn1bP97952 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC12.34□□□□□ -0.43
Scn1bP97952 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC12.34□□□□□ -0.43
Scn1bP97952 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC12.34□□□□□ -0.43
Scn1bP97952 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC12.34□□□□□ -0.43
Scn1bP97952 AC084391.1-201ENSMUST00000200651 141 ntBASIC12.34□□□□□ -0.43
Scn1bP97952 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Scn1bP97952 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Scn1bP97952 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC12.34□□□□□ -0.43
Scn1bP97952 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.34□□□□□ -0.43
Scn1bP97952 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Scn1bP97952 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms