Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC13.92□□□□□ -0.18
Msx3P70354 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Msx3P70354 Gm9522-201ENSMUST00000182394 926 ntBASIC13.92□□□□□ -0.18
Msx3P70354 Gm27989-201ENSMUST00000184721 107 ntBASIC13.92□□□□□ -0.18
Msx3P70354 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC13.92□□□□□ -0.18
Msx3P70354 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Msx3P70354 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Msx3P70354 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
Msx3P70354 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Msx3P70354 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Msx3P70354 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Msx3P70354 Gm37795-201ENSMUST00000194216 2459 ntBASIC13.91□□□□□ -0.18
Msx3P70354 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Gm38037-201ENSMUST00000192600 1624 ntBASIC13.91□□□□□ -0.18
Msx3P70354 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
Msx3P70354 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Msx3P70354 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Msx3P70354 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC13.91□□□□□ -0.18
Msx3P70354 Gm15678-201ENSMUST00000117573 960 ntBASIC13.91□□□□□ -0.18
Msx3P70354 Gm15920-201ENSMUST00000118998 402 ntBASIC13.91□□□□□ -0.18
Msx3P70354 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC13.91□□□□□ -0.18
Msx3P70354 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC13.91□□□□□ -0.18
Msx3P70354 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Msx3P70354 Mir8102-201ENSMUST00000184148 139 ntBASIC13.91□□□□□ -0.18
Msx3P70354 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC13.91□□□□□ -0.18
Msx3P70354 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC13.91□□□□□ -0.18
Msx3P70354 AC159114.1-201ENSMUST00000220349 266 ntBASIC13.91□□□□□ -0.18
Msx3P70354 AC139580.1-202ENSMUST00000223574 928 ntBASIC13.91□□□□□ -0.18
Msx3P70354 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Gm20445-201ENSMUST00000061905 565 ntBASIC13.91□□□□□ -0.18
Msx3P70354 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC13.91□□□□□ -0.18
Msx3P70354 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Msx3P70354 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC13.91□□□□□ -0.18
Msx3P70354 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Msx3P70354 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
Msx3P70354 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
Msx3P70354 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Mir874-201ENSMUST00000104769 76 ntBASIC13.9□□□□□ -0.18
Msx3P70354 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC13.9□□□□□ -0.18
Msx3P70354 Gm13886-201ENSMUST00000117876 1183 ntBASIC13.9□□□□□ -0.18
Msx3P70354 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC13.9□□□□□ -0.18
Msx3P70354 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Msx3P70354 Gm21854-201ENSMUST00000179901 471 ntBASIC13.9□□□□□ -0.18
Msx3P70354 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Tmed9-203ENSMUST00000224741 1450 ntBASIC13.9□□□□□ -0.18
Msx3P70354 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Msx3P70354 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Msx3P70354 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms